miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16499 5' -52.5 NC_004084.1 + 56557 0.66 0.883001
Target:  5'- cCAgGAGgcgaCGUCGUC--CGUCGCGCUg -3'
miRNA:   3'- -GUgCUCaa--GCAGUAGauGCGGUGCGA- -5'
16499 5' -52.5 NC_004084.1 + 18773 0.66 0.883001
Target:  5'- gCGCGAGUUCcUCG---GCGUCGCGUa -3'
miRNA:   3'- -GUGCUCAAGcAGUagaUGCGGUGCGa -5'
16499 5' -52.5 NC_004084.1 + 31344 0.66 0.882238
Target:  5'- aGC-AGUUCGUCGUCgACGUCgagcaucGCGCg -3'
miRNA:   3'- gUGcUCAAGCAGUAGaUGCGG-------UGCGa -5'
16499 5' -52.5 NC_004084.1 + 27979 0.66 0.875259
Target:  5'- aGCGGGa-CGUCGUCcuCGCCAuCGCUu -3'
miRNA:   3'- gUGCUCaaGCAGUAGauGCGGU-GCGA- -5'
16499 5' -52.5 NC_004084.1 + 10336 0.66 0.867258
Target:  5'- aGCG-GUUCGUCuUCUA-GCCcCGCg -3'
miRNA:   3'- gUGCuCAAGCAGuAGAUgCGGuGCGa -5'
16499 5' -52.5 NC_004084.1 + 46198 0.66 0.867258
Target:  5'- gGCGAGaUCGUCGUCggaUGCGUCgACGa- -3'
miRNA:   3'- gUGCUCaAGCAGUAG---AUGCGG-UGCga -5'
16499 5' -52.5 NC_004084.1 + 46872 0.66 0.859007
Target:  5'- aGCGuuugCGUCggCUGcCGCCACGCc -3'
miRNA:   3'- gUGCucaaGCAGuaGAU-GCGGUGCGa -5'
16499 5' -52.5 NC_004084.1 + 16320 0.66 0.850512
Target:  5'- aACGGGUUCugGUCAUUcACGUC-CGCg -3'
miRNA:   3'- gUGCUCAAG--CAGUAGaUGCGGuGCGa -5'
16499 5' -52.5 NC_004084.1 + 16222 0.66 0.850512
Target:  5'- aCGCGAGUUCGUCgacggaGUCgUACGUCuccuccauCGCc -3'
miRNA:   3'- -GUGCUCAAGCAG------UAG-AUGCGGu-------GCGa -5'
16499 5' -52.5 NC_004084.1 + 21039 0.66 0.850512
Target:  5'- -cCGAGUUCGUCGaagUCagGCGgCCACcGCa -3'
miRNA:   3'- guGCUCAAGCAGU---AGa-UGC-GGUG-CGa -5'
16499 5' -52.5 NC_004084.1 + 6554 0.67 0.841782
Target:  5'- gGCGuccgguAGUUCGacUCGUCga-GCCACGCg -3'
miRNA:   3'- gUGC------UCAAGC--AGUAGaugCGGUGCGa -5'
16499 5' -52.5 NC_004084.1 + 27887 0.67 0.841782
Target:  5'- gACGAacagCGUCAUUcGCGCuCGCGCa -3'
miRNA:   3'- gUGCUcaa-GCAGUAGaUGCG-GUGCGa -5'
16499 5' -52.5 NC_004084.1 + 35413 0.67 0.832826
Target:  5'- gACGGGUcaUCGUCGUCgaucuCGCU-CGCg -3'
miRNA:   3'- gUGCUCA--AGCAGUAGau---GCGGuGCGa -5'
16499 5' -52.5 NC_004084.1 + 35170 0.67 0.832826
Target:  5'- --aGAGgaccUUGUCGUCgACGCCACcGCUc -3'
miRNA:   3'- gugCUCa---AGCAGUAGaUGCGGUG-CGA- -5'
16499 5' -52.5 NC_004084.1 + 30292 0.67 0.822724
Target:  5'- gACGAGgaCGUCAUUgacGCGCUcgucgagGCGCa -3'
miRNA:   3'- gUGCUCaaGCAGUAGa--UGCGG-------UGCGa -5'
16499 5' -52.5 NC_004084.1 + 50360 0.68 0.784999
Target:  5'- gGCGAcaucUUCGagAUCaACGCCGCGCa -3'
miRNA:   3'- gUGCUc---AAGCagUAGaUGCGGUGCGa -5'
16499 5' -52.5 NC_004084.1 + 54607 0.68 0.7749
Target:  5'- -uCGAGUcaGUCAUCggcgGCGUCACGUa -3'
miRNA:   3'- guGCUCAagCAGUAGa---UGCGGUGCGa -5'
16499 5' -52.5 NC_004084.1 + 49806 0.69 0.711535
Target:  5'- uCGCGAagUCGUCGU---CGCCGCGCa -3'
miRNA:   3'- -GUGCUcaAGCAGUAgauGCGGUGCGa -5'
16499 5' -52.5 NC_004084.1 + 10919 0.7 0.678609
Target:  5'- gGgGAGUUCGUCGUCUuCGCCGa--- -3'
miRNA:   3'- gUgCUCAAGCAGUAGAuGCGGUgcga -5'
16499 5' -52.5 NC_004084.1 + 49606 0.7 0.668638
Target:  5'- gGCGAGUUCGcCGUCgacggagaucucguCGCCGgGCUc -3'
miRNA:   3'- gUGCUCAAGCaGUAGau------------GCGGUgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.