Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16500 | 5' | -56 | NC_004084.1 | + | 26016 | 0.66 | 0.696344 |
Target: 5'- cGUCGaCgGGACCGAacgcggACUCGaUCGAGCGg -3' miRNA: 3'- -UAGUgGgUCUGGCU------UGAGC-GGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 50531 | 0.66 | 0.663689 |
Target: 5'- --aGCCCcGAUcgCGAGCagcuUCGCCGGGCGa -3' miRNA: 3'- uagUGGGuCUG--GCUUG----AGCGGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 39696 | 0.66 | 0.652732 |
Target: 5'- --gGCUC-GACCGAACcCGCCAgugacGGCGa -3' miRNA: 3'- uagUGGGuCUGGCUUGaGCGGU-----UCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 2656 | 0.66 | 0.652732 |
Target: 5'- cAUCGUCCAG-UCGAGCUCGuUCGAGCc -3' miRNA: 3'- -UAGUGGGUCuGGCUUGAGC-GGUUCGc -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 8812 | 0.66 | 0.641755 |
Target: 5'- gAUC-UCCGucGACggCGAACUCGCCAAGUa -3' miRNA: 3'- -UAGuGGGU--CUG--GCUUGAGCGGUUCGc -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 36611 | 0.66 | 0.685507 |
Target: 5'- --aACCgCGGACgGAGaagCGCCAGGUGa -3' miRNA: 3'- uagUGG-GUCUGgCUUga-GCGGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 16795 | 0.66 | 0.674618 |
Target: 5'- gAUguCCCGGACCG---UCGCCucGCGu -3' miRNA: 3'- -UAguGGGUCUGGCuugAGCGGuuCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 5720 | 0.66 | 0.696344 |
Target: 5'- cGUCGCUCGGGCCGAGgucCUCGaUCGGGa- -3' miRNA: 3'- -UAGUGGGUCUGGCUU---GAGC-GGUUCgc -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 40755 | 0.66 | 0.685507 |
Target: 5'- cGUCGCCCuGugCucgGGugUCGcCCAGGCc -3' miRNA: 3'- -UAGUGGGuCugG---CUugAGC-GGUUCGc -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 31146 | 0.66 | 0.641755 |
Target: 5'- cGUCAgcggUUCGGACCGcgagauCUCGUCGAGCGc -3' miRNA: 3'- -UAGU----GGGUCUGGCuu----GAGCGGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 35604 | 0.66 | 0.685507 |
Target: 5'- cUCACCCGGcCCGAuCUCcacaGUCAGGUc -3' miRNA: 3'- uAGUGGGUCuGGCUuGAG----CGGUUCGc -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 5793 | 0.66 | 0.674618 |
Target: 5'- cUCACCCuGGuauCCGA---CGCCGGGCGu -3' miRNA: 3'- uAGUGGG-UCu--GGCUugaGCGGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 9904 | 0.67 | 0.630769 |
Target: 5'- --aACCCgAGAUCGAACcCGCCGAuGCc -3' miRNA: 3'- uagUGGG-UCUGGCUUGaGCGGUU-CGc -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 15688 | 0.67 | 0.630769 |
Target: 5'- -gCGCUCGcaGCCGAucaACUCGCCGAcGCGa -3' miRNA: 3'- uaGUGGGUc-UGGCU---UGAGCGGUU-CGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 44029 | 0.67 | 0.586934 |
Target: 5'- cAUCGCC----CCGAuCUCGCCGAGUGg -3' miRNA: 3'- -UAGUGGgucuGGCUuGAGCGGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 53775 | 0.67 | 0.586934 |
Target: 5'- -cCGCCCGGACCGcuuccaccgguGAcCUCuGCCAcgAGCGu -3' miRNA: 3'- uaGUGGGUCUGGC-----------UU-GAG-CGGU--UCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 56638 | 0.67 | 0.586934 |
Target: 5'- cGUgGCUCAGAaCGAccacCUCGCCAGGCc -3' miRNA: 3'- -UAgUGGGUCUgGCUu---GAGCGGUUCGc -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 53109 | 0.68 | 0.565207 |
Target: 5'- -gCACUC-GACgGAGC-CGCCGAGUGg -3' miRNA: 3'- uaGUGGGuCUGgCUUGaGCGGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 52688 | 0.68 | 0.55442 |
Target: 5'- gAUCAUCCcGAUCGAGgacCUCGgcCCGAGCGa -3' miRNA: 3'- -UAGUGGGuCUGGCUU---GAGC--GGUUCGC- -5' |
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16500 | 5' | -56 | NC_004084.1 | + | 35179 | 0.68 | 0.543694 |
Target: 5'- -aCAUCCGGuCCGGGC-CGCuCGAGCu -3' miRNA: 3'- uaGUGGGUCuGGCUUGaGCG-GUUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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