miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16500 5' -56 NC_004084.1 + 766 0.7 0.422058
Target:  5'- -cCA-CCAGGCCGAucgGCUCGUCGAGgCGa -3'
miRNA:   3'- uaGUgGGUCUGGCU---UGAGCGGUUC-GC- -5'
16500 5' -56 NC_004084.1 + 1278 0.7 0.460898
Target:  5'- gAUCGCCCGGggauGCCcGGCUCGCUcgauGAGUGa -3'
miRNA:   3'- -UAGUGGGUC----UGGcUUGAGCGG----UUCGC- -5'
16500 5' -56 NC_004084.1 + 1454 0.69 0.501548
Target:  5'- uUCGCUCGGACCGc-UUCGCUGAuGCGg -3'
miRNA:   3'- uAGUGGGUCUGGCuuGAGCGGUU-CGC- -5'
16500 5' -56 NC_004084.1 + 2656 0.66 0.652732
Target:  5'- cAUCGUCCAG-UCGAGCUCGuUCGAGCc -3'
miRNA:   3'- -UAGUGGGUCuGGCUUGAGC-GGUUCGc -5'
16500 5' -56 NC_004084.1 + 3662 0.75 0.205948
Target:  5'- cUCACCCAGACCGAugGCaCGCCcaccGGGCu -3'
miRNA:   3'- uAGUGGGUCUGGCU--UGaGCGG----UUCGc -5'
16500 5' -56 NC_004084.1 + 4268 0.69 0.470902
Target:  5'- cUCGCCCuucGACgCGAACggCGUCAGGUGc -3'
miRNA:   3'- uAGUGGGu--CUG-GCUUGa-GCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 5154 0.68 0.576047
Target:  5'- cGUCGCCCGGcCCGAuCUCGUCGc--- -3'
miRNA:   3'- -UAGUGGGUCuGGCUuGAGCGGUucgc -5'
16500 5' -56 NC_004084.1 + 5720 0.66 0.696344
Target:  5'- cGUCGCUCGGGCCGAGgucCUCGaUCGGGa- -3'
miRNA:   3'- -UAGUGGGUCUGGCUU---GAGC-GGUUCgc -5'
16500 5' -56 NC_004084.1 + 5793 0.66 0.674618
Target:  5'- cUCACCCuGGuauCCGA---CGCCGGGCGu -3'
miRNA:   3'- uAGUGGG-UCu--GGCUugaGCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 8643 0.68 0.533038
Target:  5'- -aCACCgAGGCUGuagucCUCGCCGAGgGu -3'
miRNA:   3'- uaGUGGgUCUGGCuu---GAGCGGUUCgC- -5'
16500 5' -56 NC_004084.1 + 8812 0.66 0.641755
Target:  5'- gAUC-UCCGucGACggCGAACUCGCCAAGUa -3'
miRNA:   3'- -UAGuGGGU--CUG--GCUUGAGCGGUUCGc -5'
16500 5' -56 NC_004084.1 + 9904 0.67 0.630769
Target:  5'- --aACCCgAGAUCGAACcCGCCGAuGCc -3'
miRNA:   3'- uagUGGG-UCUGGCUUGaGCGGUU-CGc -5'
16500 5' -56 NC_004084.1 + 13341 0.71 0.385253
Target:  5'- ----aCCAGAUCGAACUCGCCA-GUa -3'
miRNA:   3'- uagugGGUCUGGCUUGAGCGGUuCGc -5'
16500 5' -56 NC_004084.1 + 15688 0.67 0.630769
Target:  5'- -gCGCUCGcaGCCGAucaACUCGCCGAcGCGa -3'
miRNA:   3'- uaGUGGGUc-UGGCU---UGAGCGGUU-CGC- -5'
16500 5' -56 NC_004084.1 + 16795 0.66 0.674618
Target:  5'- gAUguCCCGGACCG---UCGCCucGCGu -3'
miRNA:   3'- -UAguGGGUCUGGCuugAGCGGuuCGC- -5'
16500 5' -56 NC_004084.1 + 21524 0.69 0.491232
Target:  5'- uUCGCC---GCCGAGUUCGCCGAGCu -3'
miRNA:   3'- uAGUGGgucUGGCUUGAGCGGUUCGc -5'
16500 5' -56 NC_004084.1 + 23247 0.68 0.533038
Target:  5'- --gGCCCGGACCGGAUgucgaacgguUCGgucuggagaCCGAGCGg -3'
miRNA:   3'- uagUGGGUCUGGCUUG----------AGC---------GGUUCGC- -5'
16500 5' -56 NC_004084.1 + 23465 0.74 0.241082
Target:  5'- uAUCGCCCGGACCGcgaugGACUCGaUCA-GCGa -3'
miRNA:   3'- -UAGUGGGUCUGGC-----UUGAGC-GGUuCGC- -5'
16500 5' -56 NC_004084.1 + 26016 0.66 0.696344
Target:  5'- cGUCGaCgGGACCGAacgcggACUCGaUCGAGCGg -3'
miRNA:   3'- -UAGUgGgUCUGGCU------UGAGC-GGUUCGC- -5'
16500 5' -56 NC_004084.1 + 27268 0.68 0.55442
Target:  5'- uGUCGCCgaaaGGugUGAACgaugUCGUCAAGCGc -3'
miRNA:   3'- -UAGUGGg---UCugGCUUG----AGCGGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.