miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16501 3' -53.9 NC_004084.1 + 57228 1.09 0.001952
Target:  5'- gCUUACGCGACUACGUCCACGACCGCGu -3'
miRNA:   3'- -GAAUGCGCUGAUGCAGGUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 28714 0.9 0.035095
Target:  5'- --gACGCGACUcagccaggacaGCGUCCGCGACCGCGu -3'
miRNA:   3'- gaaUGCGCUGA-----------UGCAGGUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 41879 0.76 0.281255
Target:  5'- -cUGCGCGaACUGCGaggaggUCCacgACGACCGCGg -3'
miRNA:   3'- gaAUGCGC-UGAUGC------AGG---UGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 28984 0.75 0.333978
Target:  5'- --cGCGCGACcgACGUCgGCcugauGACCGCGa -3'
miRNA:   3'- gaaUGCGCUGa-UGCAGgUG-----CUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 16320 0.74 0.411838
Target:  5'- --aACGgGuuCUggucauucACGUCCGCGACCGCGa -3'
miRNA:   3'- gaaUGCgCu-GA--------UGCAGGUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 9844 0.73 0.421159
Target:  5'- ---gUGuCGGCUGCGUCCugauucgccuCGACCGCGa -3'
miRNA:   3'- gaauGC-GCUGAUGCAGGu---------GCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 23079 0.73 0.421159
Target:  5'- --gACGCGACgagguggACGUCgGCGACCuCGg -3'
miRNA:   3'- gaaUGCGCUGa------UGCAGgUGCUGGcGC- -5'
16501 3' -53.9 NC_004084.1 + 47901 0.72 0.46959
Target:  5'- --aACGCGACgguCGcUCCGCGagguGCCGCGc -3'
miRNA:   3'- gaaUGCGCUGau-GC-AGGUGC----UGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 38444 0.71 0.531203
Target:  5'- --cGCGCGACgucgACGUcgucaaCCACGGCCGg- -3'
miRNA:   3'- gaaUGCGCUGa---UGCA------GGUGCUGGCgc -5'
16501 3' -53.9 NC_004084.1 + 19076 0.71 0.552408
Target:  5'- --gGCGCGGCcgucUACGUCgACGucgaucagcACCGCGg -3'
miRNA:   3'- gaaUGCGCUG----AUGCAGgUGC---------UGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 18565 0.71 0.573861
Target:  5'- -gUGCuCGACgGCG-CCGCGGCCGCc -3'
miRNA:   3'- gaAUGcGCUGaUGCaGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 29631 0.7 0.606372
Target:  5'- --gGCuGuCGGCUccggACGUCgACGACCGCGc -3'
miRNA:   3'- gaaUG-C-GCUGA----UGCAGgUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 1859 0.7 0.617264
Target:  5'- --aGCGCGACggacgACGucgccUCCugGACUGCc -3'
miRNA:   3'- gaaUGCGCUGa----UGC-----AGGugCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 28879 0.69 0.639077
Target:  5'- gCUUACGCuccGGC-GCGUCaC-CGGCCGCGc -3'
miRNA:   3'- -GAAUGCG---CUGaUGCAG-GuGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 52162 0.69 0.671725
Target:  5'- --gACGcCGACcACGUCgACGaACCGCu -3'
miRNA:   3'- gaaUGC-GCUGaUGCAGgUGC-UGGCGc -5'
16501 3' -53.9 NC_004084.1 + 24059 0.69 0.671725
Target:  5'- --gACGCGguuGCgGCGUCCAUcauGCCGCGa -3'
miRNA:   3'- gaaUGCGC---UGaUGCAGGUGc--UGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 44405 0.69 0.681468
Target:  5'- --aGCGCGGCUGgcucggcaaccCGUUccgaacggacgagCACGGCCGCGu -3'
miRNA:   3'- gaaUGCGCUGAU-----------GCAG-------------GUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 51437 0.69 0.682548
Target:  5'- --cACGCuGAuCUACGUUgGCGaggGCCGCGg -3'
miRNA:   3'- gaaUGCG-CU-GAUGCAGgUGC---UGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 21985 0.68 0.704042
Target:  5'- -gUGCaGaCGGCgUACGUCgACGACgCGCGg -3'
miRNA:   3'- gaAUG-C-GCUG-AUGCAGgUGCUG-GCGC- -5'
16501 3' -53.9 NC_004084.1 + 53301 0.68 0.714691
Target:  5'- ---cCGCGAgUACGUugaCCcgGCGAUCGCGg -3'
miRNA:   3'- gaauGCGCUgAUGCA---GG--UGCUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.