miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16501 3' -53.9 NC_004084.1 + 1859 0.7 0.617264
Target:  5'- --aGCGCGACggacgACGucgccUCCugGACUGCc -3'
miRNA:   3'- gaaUGCGCUGa----UGC-----AGGugCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 1989 0.67 0.776514
Target:  5'- --gAUGCaGACUACGUCguCGAggaCGCGa -3'
miRNA:   3'- gaaUGCG-CUGAUGCAGguGCUg--GCGC- -5'
16501 3' -53.9 NC_004084.1 + 9844 0.73 0.421159
Target:  5'- ---gUGuCGGCUGCGUCCugauucgccuCGACCGCGa -3'
miRNA:   3'- gaauGC-GCUGAUGCAGGu---------GCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 14670 0.66 0.833072
Target:  5'- ---cCGCGA--GCGUCC-CGGCCGgGu -3'
miRNA:   3'- gaauGCGCUgaUGCAGGuGCUGGCgC- -5'
16501 3' -53.9 NC_004084.1 + 16320 0.74 0.411838
Target:  5'- --aACGgGuuCUggucauucACGUCCGCGACCGCGa -3'
miRNA:   3'- gaaUGCgCu-GA--------UGCAGGUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 17028 0.66 0.841828
Target:  5'- ---cCGCGACcgaGCGUCUGCGcCCGuCGa -3'
miRNA:   3'- gaauGCGCUGa--UGCAGGUGCuGGC-GC- -5'
16501 3' -53.9 NC_004084.1 + 18565 0.71 0.573861
Target:  5'- -gUGCuCGACgGCG-CCGCGGCCGCc -3'
miRNA:   3'- gaAUGcGCUGaUGCaGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 19076 0.71 0.552408
Target:  5'- --gGCGCGGCcgucUACGUCgACGucgaucagcACCGCGg -3'
miRNA:   3'- gaaUGCGCUG----AUGCAGgUGC---------UGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 21436 0.66 0.824108
Target:  5'- ---uCGUGAggAUGUCCGCGAgCGCc -3'
miRNA:   3'- gaauGCGCUgaUGCAGGUGCUgGCGc -5'
16501 3' -53.9 NC_004084.1 + 21985 0.68 0.704042
Target:  5'- -gUGCaGaCGGCgUACGUCgACGACgCGCGg -3'
miRNA:   3'- gaAUG-C-GCUG-AUGCAGgUGCUG-GCGC- -5'
16501 3' -53.9 NC_004084.1 + 23079 0.73 0.421159
Target:  5'- --gACGCGACgagguggACGUCgGCGACCuCGg -3'
miRNA:   3'- gaaUGCGCUGa------UGCAGgUGCUGGcGC- -5'
16501 3' -53.9 NC_004084.1 + 24059 0.69 0.671725
Target:  5'- --gACGCGguuGCgGCGUCCAUcauGCCGCGa -3'
miRNA:   3'- gaaUGCGC---UGaUGCAGGUGc--UGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 26445 0.66 0.850367
Target:  5'- ----gGCGGCUACaaacuUCC-CGACCGCc -3'
miRNA:   3'- gaaugCGCUGAUGc----AGGuGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 26566 0.67 0.776514
Target:  5'- --gACGU-ACUuaccGCGUCCAUGGCCGUc -3'
miRNA:   3'- gaaUGCGcUGA----UGCAGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 26596 0.67 0.776514
Target:  5'- --gACGU-ACUuaccGCGUCCAUGGCCGUc -3'
miRNA:   3'- gaaUGCGcUGA----UGCAGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 26626 0.67 0.776514
Target:  5'- --gACGU-ACUuaccGCGUCCAUGGCCGUc -3'
miRNA:   3'- gaaUGCGcUGA----UGCAGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 27144 0.68 0.714691
Target:  5'- ---cCGCGACcggccACGUUCGagcuCGACCGCGg -3'
miRNA:   3'- gaauGCGCUGa----UGCAGGU----GCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 28714 0.9 0.035095
Target:  5'- --gACGCGACUcagccaggacaGCGUCCGCGACCGCGu -3'
miRNA:   3'- gaaUGCGCUGA-----------UGCAGGUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 28879 0.69 0.639077
Target:  5'- gCUUACGCuccGGC-GCGUCaC-CGGCCGCGc -3'
miRNA:   3'- -GAAUGCG---CUGaUGCAG-GuGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 28984 0.75 0.333978
Target:  5'- --cGCGCGACcgACGUCgGCcugauGACCGCGa -3'
miRNA:   3'- gaaUGCGCUGa-UGCAGgUG-----CUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.