Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16503 | 3' | -58.9 | NC_004084.1 | + | 7359 | 0.68 | 0.381808 |
Target: 5'- cAGgAGG-CGCGGUucGCUCCGACGGu -3' miRNA: 3'- -UCgUCCgGCGUCGcuUGAGGCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 55554 | 0.68 | 0.381808 |
Target: 5'- uGGCuGGCCGCGaCGAACU-CGuCGGCc -3' miRNA: 3'- -UCGuCCGGCGUcGCUUGAgGCuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 40446 | 0.68 | 0.381808 |
Target: 5'- --gAGGCCGagGGCG-ACaCCGACGACg -3' miRNA: 3'- ucgUCCGGCg-UCGCuUGaGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 43768 | 0.68 | 0.396787 |
Target: 5'- cGCGGGCaucgacugggcgcuCGcCGGCGGAgagUCCGGCGGCg -3' miRNA: 3'- uCGUCCG--------------GC-GUCGCUUg--AGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 27785 | 0.68 | 0.408493 |
Target: 5'- cAGCAGcGUCGUcGCGAACUCguaGuCGGCg -3' miRNA: 3'- -UCGUC-CGGCGuCGCUUGAGg--CuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 35474 | 0.68 | 0.408493 |
Target: 5'- gAGCAGGUCgagGCGGCGAucgCCGAgauccCGACc -3' miRNA: 3'- -UCGUCCGG---CGUCGCUugaGGCU-----GCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 33505 | 0.67 | 0.436313 |
Target: 5'- cGguGGCCGaacgaAGCGAGCUCUacuCGAg -3' miRNA: 3'- uCguCCGGCg----UCGCUUGAGGcu-GCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 10386 | 0.67 | 0.44487 |
Target: 5'- gAGCAGGCgaucgagCGCGaaGAACUCCG-CGAg -3' miRNA: 3'- -UCGUCCG-------GCGUcgCUUGAGGCuGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 7170 | 0.67 | 0.445827 |
Target: 5'- gGGUcGGUCGCAGCGA--UCCgGACGuCg -3' miRNA: 3'- -UCGuCCGGCGUCGCUugAGG-CUGCuG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 685 | 0.67 | 0.445827 |
Target: 5'- gAGCAGGCCGCGGgUGAgucGCga-GAUGAg -3' miRNA: 3'- -UCGUCCGGCGUC-GCU---UGaggCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 24021 | 0.67 | 0.455455 |
Target: 5'- cGGCGauGGaCGCGguuGCGGGCUCCcaGACGGCg -3' miRNA: 3'- -UCGU--CCgGCGU---CGCUUGAGG--CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 31461 | 0.67 | 0.465194 |
Target: 5'- cAGCGGGCaauggauGCGGUGAGCgcguccgCCGucGCGAUg -3' miRNA: 3'- -UCGUCCGg------CGUCGCUUGa------GGC--UGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 29059 | 0.67 | 0.465194 |
Target: 5'- uGGCAGGCCGCGaccGCccGCUCgGG-GGCg -3' miRNA: 3'- -UCGUCCGGCGU---CGcuUGAGgCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 355 | 0.67 | 0.47504 |
Target: 5'- cAGguGGCCucucgaaacuguGCcGCGAGC-CCGGgGACg -3' miRNA: 3'- -UCguCCGG------------CGuCGCUUGaGGCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 28532 | 0.67 | 0.484989 |
Target: 5'- uGCGuGGCCGgGGaCGu-CUuuGACGACg -3' miRNA: 3'- uCGU-CCGGCgUC-GCuuGAggCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 42648 | 0.67 | 0.484989 |
Target: 5'- -cCAGuCgGCGGCGcAgUCCGACGACg -3' miRNA: 3'- ucGUCcGgCGUCGCuUgAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 51752 | 0.67 | 0.484989 |
Target: 5'- gAGCAGcGCCGaAGCGA-CUUCuACGGCc -3' miRNA: 3'- -UCGUC-CGGCgUCGCUuGAGGcUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 49342 | 0.66 | 0.495037 |
Target: 5'- cGGCGuaCCGCGGCGAuCUCCGAaCGu- -3' miRNA: 3'- -UCGUccGGCGUCGCUuGAGGCU-GCug -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 3584 | 0.66 | 0.495037 |
Target: 5'- gAGCGGGCgacCGCGaCGAACguccUCCaGACGGCc -3' miRNA: 3'- -UCGUCCG---GCGUcGCUUG----AGG-CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 28670 | 0.66 | 0.505178 |
Target: 5'- ----cGCCGCAGCGAGCUCaaCGuCGAg -3' miRNA: 3'- ucgucCGGCGUCGCUUGAG--GCuGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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