Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16503 | 3' | -58.9 | NC_004084.1 | + | 355 | 0.67 | 0.47504 |
Target: 5'- cAGguGGCCucucgaaacuguGCcGCGAGC-CCGGgGACg -3' miRNA: 3'- -UCguCCGG------------CGuCGCUUGaGGCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 685 | 0.67 | 0.445827 |
Target: 5'- gAGCAGGCCGCGGgUGAgucGCga-GAUGAg -3' miRNA: 3'- -UCGUCCGGCGUC-GCU---UGaggCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 1783 | 0.73 | 0.214245 |
Target: 5'- gAGguGGUCGUucugagccacgauccGGCGAACUcgccgaCCGGCGACg -3' miRNA: 3'- -UCguCCGGCG---------------UCGCUUGA------GGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 2543 | 0.73 | 0.196098 |
Target: 5'- cGGguGGCCGCuGCGGACcucuUCCG-CGAa -3' miRNA: 3'- -UCguCCGGCGuCGCUUG----AGGCuGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 3584 | 0.66 | 0.495037 |
Target: 5'- gAGCGGGCgacCGCGaCGAACguccUCCaGACGGCc -3' miRNA: 3'- -UCGUCCG---GCGUcGCUUG----AGG-CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 5104 | 0.7 | 0.316536 |
Target: 5'- aGGCGGGCCGcCAGCuGGCcgaCCGuCGAUa -3' miRNA: 3'- -UCGUCCGGC-GUCGcUUGa--GGCuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 6658 | 0.66 | 0.52572 |
Target: 5'- uGuCAGGCCGUagaagucgcuucGGCGcuGCUC-GACGACg -3' miRNA: 3'- uC-GUCCGGCG------------UCGCu-UGAGgCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 7170 | 0.67 | 0.445827 |
Target: 5'- gGGUcGGUCGCAGCGA--UCCgGACGuCg -3' miRNA: 3'- -UCGuCCGGCGUCGCUugAGG-CUGCuG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 7359 | 0.68 | 0.381808 |
Target: 5'- cAGgAGG-CGCGGUucGCUCCGACGGu -3' miRNA: 3'- -UCgUCCgGCGUCGcuUGAGGCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 7590 | 0.72 | 0.229666 |
Target: 5'- cGCAGGCaucgggccacagccaGCAGCuGGACUaCGACGGCg -3' miRNA: 3'- uCGUCCGg--------------CGUCG-CUUGAgGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 10386 | 0.67 | 0.44487 |
Target: 5'- gAGCAGGCgaucgagCGCGaaGAACUCCG-CGAg -3' miRNA: 3'- -UCGUCCG-------GCGUcgCUUGAGGCuGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 12836 | 0.7 | 0.316536 |
Target: 5'- gAGCGGGuuGUugaacGCGAAC-CCGuCGGCg -3' miRNA: 3'- -UCGUCCggCGu----CGCUUGaGGCuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 13085 | 0.66 | 0.52572 |
Target: 5'- cGCAGa--GCAGCGAaaccuACUCCGgcACGGCu -3' miRNA: 3'- uCGUCcggCGUCGCU-----UGAGGC--UGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 15272 | 0.71 | 0.266624 |
Target: 5'- gAGgAGGCgGCGGCaauaUCCGGCGGCu -3' miRNA: 3'- -UCgUCCGgCGUCGcuugAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 16870 | 0.71 | 0.253583 |
Target: 5'- aAGUGGGaucucgagCGCGGCGucuGCUCCGAuCGACg -3' miRNA: 3'- -UCGUCCg-------GCGUCGCu--UGAGGCU-GCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 18558 | 0.66 | 0.505178 |
Target: 5'- gGGUGGGCCGaCGGgGAGaUCgCGACGGu -3' miRNA: 3'- -UCGUCCGGC-GUCgCUUgAG-GCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 19883 | 0.66 | 0.515408 |
Target: 5'- cGGCGGuGCCGcCGGUguagaacagGAACUUCGaACGAUg -3' miRNA: 3'- -UCGUC-CGGC-GUCG---------CUUGAGGC-UGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 21681 | 0.69 | 0.364675 |
Target: 5'- uGCAGGuuGCGuuGCGAGCacagCUGACGuCg -3' miRNA: 3'- uCGUCCggCGU--CGCUUGa---GGCUGCuG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 22387 | 0.66 | 0.505178 |
Target: 5'- cAGgAGGUCGaacgcuacCGGaCGAucacgcuucucgGCUCCGACGACg -3' miRNA: 3'- -UCgUCCGGC--------GUC-GCU------------UGAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 23129 | 0.66 | 0.515408 |
Target: 5'- cAGCAGGCucuCGC-GCuGACUUCGcCGACu -3' miRNA: 3'- -UCGUCCG---GCGuCGcUUGAGGCuGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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