Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16503 | 3' | -58.9 | NC_004084.1 | + | 35474 | 0.68 | 0.408493 |
Target: 5'- gAGCAGGUCgagGCGGCGAucgCCGAgauccCGACc -3' miRNA: 3'- -UCGUCCGG---CGUCGCUugaGGCU-----GCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 57529 | 0.69 | 0.348082 |
Target: 5'- ----cGCCGaCAGCGAuaccgAUUCCGACGGCg -3' miRNA: 3'- ucgucCGGC-GUCGCU-----UGAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 21681 | 0.69 | 0.364675 |
Target: 5'- uGCAGGuuGCGuuGCGAGCacagCUGACGuCg -3' miRNA: 3'- uCGUCCggCGU--CGCUUGa---GGCUGCuG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 23659 | 0.69 | 0.364675 |
Target: 5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3' miRNA: 3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 23749 | 0.69 | 0.364675 |
Target: 5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3' miRNA: 3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 47383 | 0.68 | 0.380939 |
Target: 5'- cGCGucGUCGaCGGCGAGCUCCagggcgcGACGACg -3' miRNA: 3'- uCGUc-CGGC-GUCGCUUGAGG-------CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 40446 | 0.68 | 0.381808 |
Target: 5'- --gAGGCCGagGGCG-ACaCCGACGACg -3' miRNA: 3'- ucgUCCGGCg-UCGCuUGaGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 55554 | 0.68 | 0.381808 |
Target: 5'- uGGCuGGCCGCGaCGAACU-CGuCGGCc -3' miRNA: 3'- -UCGuCCGGCGUcGCUUGAgGCuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 43768 | 0.68 | 0.396787 |
Target: 5'- cGCGGGCaucgacugggcgcuCGcCGGCGGAgagUCCGGCGGCg -3' miRNA: 3'- uCGUCCG--------------GC-GUCGCUUg--AGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 45509 | 0.69 | 0.348082 |
Target: 5'- uGGcCGGGCCGguCGGCc-ACUCCGAgGACg -3' miRNA: 3'- -UC-GUCCGGC--GUCGcuUGAGGCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 5104 | 0.7 | 0.316536 |
Target: 5'- aGGCGGGCCGcCAGCuGGCcgaCCGuCGAUa -3' miRNA: 3'- -UCGUCCGGC-GUCGcUUGa--GGCuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 52030 | 0.7 | 0.287195 |
Target: 5'- gAGCAGGCUG-AGCGAGCggUCuACGGCg -3' miRNA: 3'- -UCGUCCGGCgUCGCUUGa-GGcUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 51452 | 0.74 | 0.162934 |
Target: 5'- uGGCgaGGGCCGCGGCGGcuguACgggCGACGACc -3' miRNA: 3'- -UCG--UCCGGCGUCGCU----UGag-GCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 26733 | 0.73 | 0.186062 |
Target: 5'- cGCucGGCCcaCAGCGAACUucCCGACGGCc -3' miRNA: 3'- uCGu-CCGGc-GUCGCUUGA--GGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 2543 | 0.73 | 0.196098 |
Target: 5'- cGGguGGCCGCuGCGGACcucuUCCG-CGAa -3' miRNA: 3'- -UCguCCGGCGuCGCUUG----AGGCuGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 1783 | 0.73 | 0.214245 |
Target: 5'- gAGguGGUCGUucugagccacgauccGGCGAACUcgccgaCCGGCGACg -3' miRNA: 3'- -UCguCCGGCG---------------UCGCUUGA------GGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 7590 | 0.72 | 0.229666 |
Target: 5'- cGCAGGCaucgggccacagccaGCAGCuGGACUaCGACGGCg -3' miRNA: 3'- uCGUCCGg--------------CGUCG-CUUGAgGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 16870 | 0.71 | 0.253583 |
Target: 5'- aAGUGGGaucucgagCGCGGCGucuGCUCCGAuCGACg -3' miRNA: 3'- -UCGUCCg-------GCGUCGCu--UGAGGCU-GCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 15272 | 0.71 | 0.266624 |
Target: 5'- gAGgAGGCgGCGGCaauaUCCGGCGGCu -3' miRNA: 3'- -UCgUCCGgCGUCGcuugAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 56196 | 0.71 | 0.273346 |
Target: 5'- cGCuGGCCGaAGCGAGCggCGAgGACa -3' miRNA: 3'- uCGuCCGGCgUCGCUUGagGCUgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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