miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 57010 0.66 0.970936
Target:  5'- gCCGAGAauGGCgacGCCGGUGAuaaugagUGAUGAUa -3'
miRNA:   3'- aGGCUUU--UCG---UGGCUACUu------GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 34338 0.66 0.964082
Target:  5'- gUCGAAGAGCGCacuucgCGGcaUGAugGACGcCg -3'
miRNA:   3'- aGGCUUUUCGUG------GCU--ACUugCUGCuG- -5'
16505 5' -49.5 NC_004084.1 + 55038 0.66 0.960262
Target:  5'- cUCGAGGAGCuccgccaucuucACCGGguUGAACGGUGGCc -3'
miRNA:   3'- aGGCUUUUCG------------UGGCU--ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12782 0.66 0.967637
Target:  5'- aUCCGAGA--CGCCGuc-GACGAcCGACa -3'
miRNA:   3'- -AGGCUUUucGUGGCuacUUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 29236 0.66 0.95617
Target:  5'- gCCGAgcAGGGCGaguuCCGcUGGACGaACGGCc -3'
miRNA:   3'- aGGCU--UUUCGU----GGCuACUUGC-UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 5039 0.66 0.967637
Target:  5'- cCCGAcGAGgGCCGGaucuUGuAGCGGuCGGCg -3'
miRNA:   3'- aGGCUuUUCgUGGCU----AC-UUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 25361 0.66 0.95617
Target:  5'- uUCCGAAAcGgAUCGAcgUGAGCGcCGAg -3'
miRNA:   3'- -AGGCUUUuCgUGGCU--ACUUGCuGCUg -5'
16505 5' -49.5 NC_004084.1 + 57631 0.66 0.970936
Target:  5'- cUCGAccaacacaAGGGCGaCGAUGAAuCGugGACg -3'
miRNA:   3'- aGGCU--------UUUCGUgGCUACUU-GCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 38720 0.66 0.959865
Target:  5'- gUCGAAgucguggGAGUGCuCGGUGAACG-CGAUg -3'
miRNA:   3'- aGGCUU-------UUCGUG-GCUACUUGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 3780 0.66 0.967637
Target:  5'- gCCGuu--GCGCgGGUuGACGACGAUu -3'
miRNA:   3'- aGGCuuuuCGUGgCUAcUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 36016 0.66 0.970617
Target:  5'- gCCGAGAAGCGugaucguCCGGU-AGCGuuCGACc -3'
miRNA:   3'- aGGCUUUUCGU-------GGCUAcUUGCu-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 16926 0.66 0.967637
Target:  5'- gCCGGGugcgguucGGCAUCGgcGGGCGucGCGACg -3'
miRNA:   3'- aGGCUUu-------UCGUGGCuaCUUGC--UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6101 0.67 0.931459
Target:  5'- gUCCGGAgaAAGUACC-AUG-ACGAUGAg -3'
miRNA:   3'- -AGGCUU--UUCGUGGcUACuUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 49869 0.67 0.931459
Target:  5'- aUCCGgcGAGUcCUGcgGGACGAUGGg -3'
miRNA:   3'- -AGGCuuUUCGuGGCuaCUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 7459 0.67 0.936981
Target:  5'- gUCCGAc-GGCGacUCGAgcGGCGACGGCg -3'
miRNA:   3'- -AGGCUuuUCGU--GGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 37041 0.67 0.941187
Target:  5'- cCCGAGcuGGCACCGAcgaagcggaaaacgcUGAAggcacuccucugugcCGAUGACg -3'
miRNA:   3'- aGGCUUu-UCGUGGCU---------------ACUU---------------GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 3716 0.67 0.947149
Target:  5'- aUCCGGAAGcGUAUgGAcGAGCG-CGGCu -3'
miRNA:   3'- -AGGCUUUU-CGUGgCUaCUUGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 21389 0.67 0.947149
Target:  5'- aCCGuGAGGCGgCGAUGAccggccuCGAUGAg -3'
miRNA:   3'- aGGCuUUUCGUgGCUACUu------GCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 1051 0.67 0.951801
Target:  5'- uUCCGA--GGCAUC--UGGGCGAUGAa -3'
miRNA:   3'- -AGGCUuuUCGUGGcuACUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 23374 0.67 0.951801
Target:  5'- gCCGGuaucAGGCgaucAUCGAUGAGaugauCGACGACg -3'
miRNA:   3'- aGGCUu---UUCG----UGGCUACUU-----GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.