Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 10016 | 0.66 | 0.967637 |
Target: 5'- cUCCGAGAuGGCGgccaCGAUGccGCGuCGACg -3' miRNA: 3'- -AGGCUUU-UCGUg---GCUACu-UGCuGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 36530 | 0.66 | 0.970936 |
Target: 5'- aCCGAGA--CGCCGAUcgcgacaacGGuauCGACGACg -3' miRNA: 3'- aGGCUUUucGUGGCUA---------CUu--GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 55348 | 0.66 | 0.963712 |
Target: 5'- aUCGAGAucGCGCCaaacagcaaggagGAUGA-CGACGAUg -3' miRNA: 3'- aGGCUUUu-CGUGG-------------CUACUuGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 45762 | 0.66 | 0.970936 |
Target: 5'- cUCGAucGGGaCGCCGAUGGaggucAUGugGGCg -3' miRNA: 3'- aGGCUu-UUC-GUGGCUACU-----UGCugCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 38266 | 0.66 | 0.969973 |
Target: 5'- gCUGAGAcucaucaguGCACCGAaccUGAauacaucgcuacugACGGCGGCg -3' miRNA: 3'- aGGCUUUu--------CGUGGCU---ACU--------------UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 57010 | 0.66 | 0.970936 |
Target: 5'- gCCGAGAauGGCgacGCCGGUGAuaaugagUGAUGAUa -3' miRNA: 3'- aGGCUUU--UCG---UGGCUACUu------GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 35205 | 0.66 | 0.964082 |
Target: 5'- cUCCGAAucGUcgggaucgaGCCGAcGAucGCGAuCGACg -3' miRNA: 3'- -AGGCUUuuCG---------UGGCUaCU--UGCU-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 57631 | 0.66 | 0.970936 |
Target: 5'- cUCGAccaacacaAGGGCGaCGAUGAAuCGugGACg -3' miRNA: 3'- aGGCU--------UUUCGUgGCUACUU-GCugCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 12707 | 0.66 | 0.955746 |
Target: 5'- aCCGAAAcuggggcGGCAUCGAucUGGAUGccCGACu -3' miRNA: 3'- aGGCUUU-------UCGUGGCU--ACUUGCu-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 7544 | 0.66 | 0.967637 |
Target: 5'- aUCCaGGAcGGCAUCGAgaaGAACGcCGAg -3' miRNA: 3'- -AGG-CUUuUCGUGGCUa--CUUGCuGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 30279 | 0.66 | 0.970936 |
Target: 5'- gCCGA--AGUAUCGA--GACGAgGACg -3' miRNA: 3'- aGGCUuuUCGUGGCUacUUGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 5346 | 0.66 | 0.960262 |
Target: 5'- gCCGAGcGGGCGgCGAggacugGGACGAucuCGACg -3' miRNA: 3'- aGGCUU-UUCGUgGCUa-----CUUGCU---GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 6234 | 0.66 | 0.970936 |
Target: 5'- uUCCGGAuAGCGUCGAUcccGAcGCGGuCGACg -3' miRNA: 3'- -AGGCUUuUCGUGGCUA---CU-UGCU-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 33315 | 0.66 | 0.970936 |
Target: 5'- uUCCGcacuuGAcGCGCCGA---AUGACGACc -3' miRNA: 3'- -AGGCu----UUuCGUGGCUacuUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 39352 | 0.66 | 0.95617 |
Target: 5'- aUCCGAAccuGC-CCGuucGUGAG-GACGACg -3' miRNA: 3'- -AGGCUUuu-CGuGGC---UACUUgCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 28795 | 0.66 | 0.967637 |
Target: 5'- gUCCGGAgccgacagccAGGUGCCGuuGUGGGCGagcaucGCGACc -3' miRNA: 3'- -AGGCUU----------UUCGUGGC--UACUUGC------UGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 45078 | 0.66 | 0.970936 |
Target: 5'- aUCUGu--GGCG-CGAUGAACGACa-- -3' miRNA: 3'- -AGGCuuuUCGUgGCUACUUGCUGcug -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 48012 | 0.66 | 0.970936 |
Target: 5'- -gCGAGAuGGUcgaCGAccUGGACGACGACg -3' miRNA: 3'- agGCUUU-UCGug-GCU--ACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 2262 | 0.66 | 0.970936 |
Target: 5'- cUCCGAAAgcuggaggagauGGgGCUGGUcGAcgcCGACGACa -3' miRNA: 3'- -AGGCUUU------------UCgUGGCUA-CUu--GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 44882 | 0.66 | 0.960262 |
Target: 5'- gCUGAgGAGGUACagguuuCGAUGAucccgGCGACGACc -3' miRNA: 3'- aGGCU-UUUCGUG------GCUACU-----UGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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