miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 58180 1.11 0.003519
Target:  5'- cUCCGAAAAGCACCGAUGAACGACGACu -3'
miRNA:   3'- -AGGCUUUUCGUGGCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56977 0.81 0.287614
Target:  5'- gUCCGAgcgaagGAGGCgGCCGA-GGACGGCGACg -3'
miRNA:   3'- -AGGCU------UUUCG-UGGCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 20018 0.8 0.335093
Target:  5'- aUCCGAucGGCGCuCGA-GGACGACGAUc -3'
miRNA:   3'- -AGGCUuuUCGUG-GCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 18991 0.78 0.388051
Target:  5'- cUCGAucaacGAAGCAUCGAgugaGGACGACGACg -3'
miRNA:   3'- aGGCU-----UUUCGUGGCUa---CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6865 0.77 0.45638
Target:  5'- aCCGAGAGGCGuuGAUGGcugGCcACGACg -3'
miRNA:   3'- aGGCUUUUCGUggCUACU---UGcUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 38752 0.76 0.508935
Target:  5'- aCCagGGGAGGCAcguCCGAUGAcgcACGACGACc -3'
miRNA:   3'- aGG--CUUUUCGU---GGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 58059 0.76 0.530669
Target:  5'- cCCGguAGGCGCCG-UGuuCGACGGCg -3'
miRNA:   3'- aGGCuuUUCGUGGCuACuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12530 0.75 0.575063
Target:  5'- aUCUcGAGAGCuuGCaGGUGAGCGACGACg -3'
miRNA:   3'- -AGGcUUUUCG--UGgCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39300 0.74 0.597593
Target:  5'- aUCGucGAGCACCGAgaGGGCGAgGACu -3'
miRNA:   3'- aGGCuuUUCGUGGCUa-CUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 36619 0.74 0.608909
Target:  5'- aCgGAGAAGCGCCaGGUGAucggUGACGGCc -3'
miRNA:   3'- aGgCUUUUCGUGG-CUACUu---GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39755 0.74 0.608909
Target:  5'- cUCCGAGGAGgcugaucccgaCGCCGAa-GACGGCGACg -3'
miRNA:   3'- -AGGCUUUUC-----------GUGGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 29744 0.74 0.631596
Target:  5'- aCCGGAGAGacCACCGgcGAGaCGAUGACc -3'
miRNA:   3'- aGGCUUUUC--GUGGCuaCUU-GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 17954 0.74 0.642945
Target:  5'- gUCCGAAGAaaaACCGAUG-ACGGCGGa -3'
miRNA:   3'- -AGGCUUUUcg-UGGCUACuUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 16046 0.73 0.654284
Target:  5'- gUCCGAGGAcGCACuCGAUGAguggaACGA-GACa -3'
miRNA:   3'- -AGGCUUUU-CGUG-GCUACU-----UGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 42813 0.73 0.699306
Target:  5'- cCCGGu-GGaCGCCGGUGAuucCGAUGACg -3'
miRNA:   3'- aGGCUuuUC-GUGGCUACUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7640 0.72 0.710418
Target:  5'- aCCGAGAAGaaCGCUGAcgaagagccGGACGACGGCg -3'
miRNA:   3'- aGGCUUUUC--GUGGCUa--------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 43544 0.72 0.721448
Target:  5'- -aCGAAGcacGGCACCGA-GAcCGGCGGCc -3'
miRNA:   3'- agGCUUU---UCGUGGCUaCUuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 43809 0.72 0.721448
Target:  5'- -gCGAGGAGCGCCGGgagaugGAucauuCGugGGCg -3'
miRNA:   3'- agGCUUUUCGUGGCUa-----CUu----GCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 57841 0.72 0.732384
Target:  5'- aCCGAAGAGCACau-----CGACGACa -3'
miRNA:   3'- aGGCUUUUCGUGgcuacuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 36222 0.72 0.753923
Target:  5'- cUCCGGucuccucgAGGGCaACCGGUGGGCGcuGCGAUc -3'
miRNA:   3'- -AGGCU--------UUUCG-UGGCUACUUGC--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.