miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 403 0.67 0.931459
Target:  5'- aCCGAGagcGAGCAggaGAUGAucgagagcgucuACGGCGACc -3'
miRNA:   3'- aGGCUU---UUCGUgg-CUACU------------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 1051 0.67 0.951801
Target:  5'- uUCCGA--GGCAUC--UGGGCGAUGAa -3'
miRNA:   3'- -AGGCUuuUCGUGGcuACUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 1670 0.69 0.868719
Target:  5'- cCCGAcgucGAGUGCUuGUGGACGAUGAUg -3'
miRNA:   3'- aGGCUu---UUCGUGGcUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 1745 0.67 0.936981
Target:  5'- aCCGAgacccgccgccGAAGUACCGAgcgGGGCcuGGCGAg -3'
miRNA:   3'- aGGCU-----------UUUCGUGGCUa--CUUG--CUGCUg -5'
16505 5' -49.5 NC_004084.1 + 1805 0.71 0.774934
Target:  5'- aUCCGGcgAAcuCGCCGAccGGCGACGACg -3'
miRNA:   3'- -AGGCU--UUucGUGGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 2262 0.66 0.970936
Target:  5'- cUCCGAAAgcuggaggagauGGgGCUGGUcGAcgcCGACGACa -3'
miRNA:   3'- -AGGCUUU------------UCgUGGCUA-CUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 2475 0.7 0.824504
Target:  5'- cCCGGGAAGguccCCGGUGuucGCGACGAUc -3'
miRNA:   3'- aGGCUUUUCgu--GGCUACu--UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 2774 0.71 0.805243
Target:  5'- -gUGGAgcGCGCCGAUGggUGA-GACg -3'
miRNA:   3'- agGCUUuuCGUGGCUACuuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 3456 0.67 0.931459
Target:  5'- gUCGGAucgcGAGCGCCGGgggaauacgGAACGGCGu- -3'
miRNA:   3'- aGGCUU----UUCGUGGCUa--------CUUGCUGCug -5'
16505 5' -49.5 NC_004084.1 + 3716 0.67 0.947149
Target:  5'- aUCCGGAAGcGUAUgGAcGAGCG-CGGCu -3'
miRNA:   3'- -AGGCUUUU-CGUGgCUaCUUGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 3780 0.66 0.967637
Target:  5'- gCCGuu--GCGCgGGUuGACGACGAUu -3'
miRNA:   3'- aGGCuuuuCGUGgCUAcUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 4138 0.68 0.925643
Target:  5'- aCCGAGAAG-AUCGuccaGAACGAgGACu -3'
miRNA:   3'- aGGCUUUUCgUGGCua--CUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 5013 0.69 0.892185
Target:  5'- aUCCGAGAggggaucaacgGGCugAUCGA-GGAUGGCGACu -3'
miRNA:   3'- -AGGCUUU-----------UCG--UGGCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 5039 0.66 0.967637
Target:  5'- cCCGAcGAGgGCCGGaucuUGuAGCGGuCGGCg -3'
miRNA:   3'- aGGCUuUUCgUGGCU----AC-UUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 5163 0.69 0.860365
Target:  5'- cCUGAGGcAGCACuCGAgucGAuCGACGACu -3'
miRNA:   3'- aGGCUUU-UCGUG-GCUa--CUuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 5346 0.66 0.960262
Target:  5'- gCCGAGcGGGCGgCGAggacugGGACGAucuCGACg -3'
miRNA:   3'- aGGCUU-UUCGUgGCUa-----CUUGCU---GCUG- -5'
16505 5' -49.5 NC_004084.1 + 6101 0.67 0.931459
Target:  5'- gUCCGGAgaAAGUACC-AUG-ACGAUGAg -3'
miRNA:   3'- -AGGCUU--UUCGUGGcUACuUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 6234 0.66 0.970936
Target:  5'- uUCCGGAuAGCGUCGAUcccGAcGCGGuCGACg -3'
miRNA:   3'- -AGGCUUuUCGUGGCUA---CU-UGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 6390 0.67 0.947149
Target:  5'- -aCG-AGAGCGCCGA-GGACcgaGAUGACu -3'
miRNA:   3'- agGCuUUUCGUGGCUaCUUG---CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6865 0.77 0.45638
Target:  5'- aCCGAGAGGCGuuGAUGGcugGCcACGACg -3'
miRNA:   3'- aGGCUUUUCGUggCUACU---UGcUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.