Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 21824 | 0.67 | 0.94221 |
Target: 5'- gUCGAcgguGAGGCGCuggaCGAUGcagggauuGGCGACGACg -3' miRNA: 3'- aGGCU----UUUCGUG----GCUAC--------UUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 37041 | 0.67 | 0.941187 |
Target: 5'- cCCGAGcuGGCACCGAcgaagcggaaaacgcUGAAggcacuccucugugcCGAUGACg -3' miRNA: 3'- aGGCUUu-UCGUGGCU---------------ACUU---------------GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 19436 | 0.67 | 0.936981 |
Target: 5'- uUCCGAuAAGGCGgcuugucgacUCGGUGAAUGugGGu -3' miRNA: 3'- -AGGCU-UUUCGU----------GGCUACUUGCugCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 1745 | 0.67 | 0.936981 |
Target: 5'- aCCGAgacccgccgccGAAGUACCGAgcgGGGCcuGGCGAg -3' miRNA: 3'- aGGCU-----------UUUCGUGGCUa--CUUG--CUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 7459 | 0.67 | 0.936981 |
Target: 5'- gUCCGAc-GGCGacUCGAgcGGCGACGGCg -3' miRNA: 3'- -AGGCUuuUCGU--GGCUacUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 49869 | 0.67 | 0.931459 |
Target: 5'- aUCCGgcGAGUcCUGcgGGACGAUGGg -3' miRNA: 3'- -AGGCuuUUCGuGGCuaCUUGCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 3456 | 0.67 | 0.931459 |
Target: 5'- gUCGGAucgcGAGCGCCGGgggaauacgGAACGGCGu- -3' miRNA: 3'- aGGCUU----UUCGUGGCUa--------CUUGCUGCug -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 403 | 0.67 | 0.931459 |
Target: 5'- aCCGAGagcGAGCAggaGAUGAucgagagcgucuACGGCGACc -3' miRNA: 3'- aGGCUU---UUCGUgg-CUACU------------UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 6101 | 0.67 | 0.931459 |
Target: 5'- gUCCGGAgaAAGUACC-AUG-ACGAUGAg -3' miRNA: 3'- -AGGCUU--UUCGUGGcUACuUGCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 4138 | 0.68 | 0.925643 |
Target: 5'- aCCGAGAAG-AUCGuccaGAACGAgGACu -3' miRNA: 3'- aGGCUUUUCgUGGCua--CUUGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 30715 | 0.68 | 0.925643 |
Target: 5'- gUCGAGGAGCugAUCGAUGGGCuguuCGACc -3' miRNA: 3'- aGGCUUUUCG--UGGCUACUUGcu--GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 19623 | 0.68 | 0.925643 |
Target: 5'- gUCGggGAGCGaguuCCGGcucGACGACGAUg -3' miRNA: 3'- aGGCuuUUCGU----GGCUac-UUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 56065 | 0.68 | 0.919534 |
Target: 5'- cUUCGAGGA-CGaCGcgGAACGACGACu -3' miRNA: 3'- -AGGCUUUUcGUgGCuaCUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 12905 | 0.68 | 0.919534 |
Target: 5'- cCUGgcGAGUacgACCGGacacUGGGCGACGAUg -3' miRNA: 3'- aGGCuuUUCG---UGGCU----ACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 7280 | 0.68 | 0.919534 |
Target: 5'- aCCGAGAu-CACC-AUGAGCaagGACGACa -3' miRNA: 3'- aGGCUUUucGUGGcUACUUG---CUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 8354 | 0.68 | 0.913131 |
Target: 5'- uUUCG-AGAGCAaucgccacCCGGUGAGgGACGAg -3' miRNA: 3'- -AGGCuUUUCGU--------GGCUACUUgCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 8693 | 0.68 | 0.913131 |
Target: 5'- cUCGAAGAGgAgaccucguaaCGGUGAACGAUGGCu -3' miRNA: 3'- aGGCUUUUCgUg---------GCUACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 41813 | 0.68 | 0.913131 |
Target: 5'- cUCGAGGAGCccGCCGGguccguaggGggUGACGAg -3' miRNA: 3'- aGGCUUUUCG--UGGCUa--------CuuGCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 19380 | 0.68 | 0.913131 |
Target: 5'- cCCGAuc-GCAUCGAccUGGGCaGGCGAUg -3' miRNA: 3'- aGGCUuuuCGUGGCU--ACUUG-CUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 49138 | 0.68 | 0.913131 |
Target: 5'- gCCGGAccAGGCGacguUCGAUgcguucacGAACGACGACc -3' miRNA: 3'- aGGCUU--UUCGU----GGCUA--------CUUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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