miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 7280 0.68 0.919534
Target:  5'- aCCGAGAu-CACC-AUGAGCaagGACGACa -3'
miRNA:   3'- aGGCUUUucGUGGcUACUUG---CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7459 0.67 0.936981
Target:  5'- gUCCGAc-GGCGacUCGAgcGGCGACGGCg -3'
miRNA:   3'- -AGGCUuuUCGU--GGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7540 0.7 0.842905
Target:  5'- cUCCGGAuuuAGGUcuacGCCGAUGAACcGuCGGCc -3'
miRNA:   3'- -AGGCUU---UUCG----UGGCUACUUG-CuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7544 0.66 0.967637
Target:  5'- aUCCaGGAcGGCAUCGAgaaGAACGcCGAg -3'
miRNA:   3'- -AGG-CUUuUCGUGGCUa--CUUGCuGCUg -5'
16505 5' -49.5 NC_004084.1 + 7640 0.72 0.710418
Target:  5'- aCCGAGAAGaaCGCUGAcgaagagccGGACGACGGCg -3'
miRNA:   3'- aGGCUUUUC--GUGGCUa--------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 8354 0.68 0.913131
Target:  5'- uUUCG-AGAGCAaucgccacCCGGUGAGgGACGAg -3'
miRNA:   3'- -AGGCuUUUCGU--------GGCUACUUgCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 8693 0.68 0.913131
Target:  5'- cUCGAAGAGgAgaccucguaaCGGUGAACGAUGGCu -3'
miRNA:   3'- aGGCUUUUCgUg---------GCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 8934 0.7 0.814976
Target:  5'- aUCCGGAugaCGCCGAcGAcuccgaggacaGCGGCGACg -3'
miRNA:   3'- -AGGCUUuucGUGGCUaCU-----------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 9717 0.66 0.967637
Target:  5'- gCCGA----CGCCGAUGc-CGGCGGCu -3'
miRNA:   3'- aGGCUuuucGUGGCUACuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 10016 0.66 0.967637
Target:  5'- cUCCGAGAuGGCGgccaCGAUGccGCGuCGACg -3'
miRNA:   3'- -AGGCUUU-UCGUg---GCUACu-UGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 10410 0.69 0.860365
Target:  5'- cUCCGcGAGGUggACUGAUGGuCGAgGACg -3'
miRNA:   3'- -AGGCuUUUCG--UGGCUACUuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 11774 0.71 0.774934
Target:  5'- aCCGAGGAGgaACUGAgcGAUGGCGACa -3'
miRNA:   3'- aGGCUUUUCg-UGGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12530 0.75 0.575063
Target:  5'- aUCUcGAGAGCuuGCaGGUGAGCGACGACg -3'
miRNA:   3'- -AGGcUUUUCG--UGgCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12571 0.71 0.78521
Target:  5'- aCCGAAGacgGGCAagCGAUGAuCGAgGACg -3'
miRNA:   3'- aGGCUUU---UCGUg-GCUACUuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 12707 0.66 0.955746
Target:  5'- aCCGAAAcuggggcGGCAUCGAucUGGAUGccCGACu -3'
miRNA:   3'- aGGCUUU-------UCGUGGCU--ACUUGCu-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 12782 0.66 0.967637
Target:  5'- aUCCGAGA--CGCCGuc-GACGAcCGACa -3'
miRNA:   3'- -AGGCUUUucGUGGCuacUUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 12905 0.68 0.919534
Target:  5'- cCUGgcGAGUacgACCGGacacUGGGCGACGAUg -3'
miRNA:   3'- aGGCuuUUCG---UGGCU----ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 16046 0.73 0.654284
Target:  5'- gUCCGAGGAcGCACuCGAUGAguggaACGA-GACa -3'
miRNA:   3'- -AGGCUUUU-CGUG-GCUACU-----UGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 16125 0.68 0.899453
Target:  5'- gCCGAgacGAAGa--CGGUGAugGACGAa -3'
miRNA:   3'- aGGCU---UUUCgugGCUACUugCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 16570 0.71 0.761342
Target:  5'- gCCGAucGGUGCCGcuuuccuacucgucgGAGCGGCGACu -3'
miRNA:   3'- aGGCUuuUCGUGGCua-------------CUUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.