miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16506 3' -51.5 NC_004084.1 + 58327 1.08 0.002701
Target:  5'- cAUCGAGACGGCAACAAGCACAACGACu -3'
miRNA:   3'- -UAGCUCUGCCGUUGUUCGUGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 17652 0.8 0.214281
Target:  5'- uUCGAGGCcugGGCGACAcccgAGCACAggGCGACg -3'
miRNA:   3'- uAGCUCUG---CCGUUGU----UCGUGU--UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 47385 0.79 0.226296
Target:  5'- cGUCGucGACGGCGAgcuccaGGGCGCGACGACg -3'
miRNA:   3'- -UAGCu-CUGCCGUUg-----UUCGUGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 3500 0.79 0.245383
Target:  5'- gAUCGAGACGGCGagcaguACGAGCGCGucuGgGACu -3'
miRNA:   3'- -UAGCUCUGCCGU------UGUUCGUGU---UgCUG- -5'
16506 3' -51.5 NC_004084.1 + 16824 0.79 0.252036
Target:  5'- cAUCGAGAUGGCucCAGGCAgGGCGGg -3'
miRNA:   3'- -UAGCUCUGCCGuuGUUCGUgUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 26469 0.78 0.272887
Target:  5'- cAUCGAGACGGCAGCAacggugucccaGGCAagcuGCGAa -3'
miRNA:   3'- -UAGCUCUGCCGUUGU-----------UCGUgu--UGCUg -5'
16506 3' -51.5 NC_004084.1 + 48876 0.76 0.370045
Target:  5'- -cCGGGGCucGCGACGAuGCACGACGGCa -3'
miRNA:   3'- uaGCUCUGc-CGUUGUU-CGUGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 5441 0.75 0.379136
Target:  5'- gAUCGcGAuCGGCGACcAGCGCAcucGCGACg -3'
miRNA:   3'- -UAGCuCU-GCCGUUGuUCGUGU---UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 7453 0.75 0.416961
Target:  5'- cUCGGaguccGACGGCGACucGAGCGgCGACGGCg -3'
miRNA:   3'- uAGCU-----CUGCCGUUG--UUCGU-GUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 4255 0.74 0.430733
Target:  5'- cUCGAGuuccGCGGCAgaaACGAGCACGacauccucaaaguccACGACg -3'
miRNA:   3'- uAGCUC----UGCCGU---UGUUCGUGU---------------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 30417 0.74 0.446795
Target:  5'- cGUCGAcgGGCGGCGACGGaaGCGAUGGCg -3'
miRNA:   3'- -UAGCU--CUGCCGUUGUUcgUGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 2195 0.74 0.446795
Target:  5'- -cCGGGACGGCAAgAuGCACGGCcACa -3'
miRNA:   3'- uaGCUCUGCCGUUgUuCGUGUUGcUG- -5'
16506 3' -51.5 NC_004084.1 + 28303 0.74 0.467331
Target:  5'- gAUCGGGGCGGCGAguagUGAGCACcuCGAg -3'
miRNA:   3'- -UAGCUCUGCCGUU----GUUCGUGuuGCUg -5'
16506 3' -51.5 NC_004084.1 + 51164 0.74 0.467331
Target:  5'- gAUCGAGACGGuCGcCGAGCACGcgcCGAUc -3'
miRNA:   3'- -UAGCUCUGCC-GUuGUUCGUGUu--GCUG- -5'
16506 3' -51.5 NC_004084.1 + 48012 0.73 0.47778
Target:  5'- -gCGAGAUGGuCGACGAcCugGACGACg -3'
miRNA:   3'- uaGCUCUGCC-GUUGUUcGugUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 41747 0.73 0.520659
Target:  5'- gAUCGGGAcgacgcCGGCGACGAGgACcucccgGACGACg -3'
miRNA:   3'- -UAGCUCU------GCCGUUGUUCgUG------UUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 31460 0.73 0.520659
Target:  5'- cUCGAGgACGGCAGCAcGCAUcgcuuCGACc -3'
miRNA:   3'- uAGCUC-UGCCGUUGUuCGUGuu---GCUG- -5'
16506 3' -51.5 NC_004084.1 + 5200 0.73 0.531618
Target:  5'- -aCGAGGCGGCAGgcAGCACGcucgagACGAUc -3'
miRNA:   3'- uaGCUCUGCCGUUguUCGUGU------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 39778 0.73 0.531618
Target:  5'- -cCGaAGACGGCGACGAGguCGgccaacucgGCGACu -3'
miRNA:   3'- uaGC-UCUGCCGUUGUUCguGU---------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 56988 0.73 0.531618
Target:  5'- --gGAGGCGGC--CGAGgACGGCGACg -3'
miRNA:   3'- uagCUCUGCCGuuGUUCgUGUUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.