miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16506 3' -51.5 NC_004084.1 + 44 0.68 0.776672
Target:  5'- -cCGAGAUGGCAgaggugACAgaGGC-CAACGAg -3'
miRNA:   3'- uaGCUCUGCCGU------UGU--UCGuGUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 327 0.67 0.816733
Target:  5'- --gGGGcGCGGCGAcCAGGacgGCAACGACa -3'
miRNA:   3'- uagCUC-UGCCGUU-GUUCg--UGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 445 0.66 0.870399
Target:  5'- cUCGAGACGGCG--GAGgACGcccAgGACg -3'
miRNA:   3'- uAGCUCUGCCGUugUUCgUGU---UgCUG- -5'
16506 3' -51.5 NC_004084.1 + 833 0.69 0.744902
Target:  5'- uUCGAGACgGGCGACuGGCucaccuucgcCAACGAg -3'
miRNA:   3'- uAGCUCUG-CCGUUGuUCGu---------GUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 1291 0.71 0.644347
Target:  5'- --gGAGACGGCGACAccgAGgACGuccuCGACu -3'
miRNA:   3'- uagCUCUGCCGUUGU---UCgUGUu---GCUG- -5'
16506 3' -51.5 NC_004084.1 + 2058 0.7 0.700889
Target:  5'- -cCGAuGACgGGCAAgAAGCACAgccucgagaACGGCa -3'
miRNA:   3'- uaGCU-CUG-CCGUUgUUCGUGU---------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 2195 0.74 0.446795
Target:  5'- -cCGGGACGGCAAgAuGCACGGCcACa -3'
miRNA:   3'- uaGCUCUGCCGUUgUuCGUGUUGcUG- -5'
16506 3' -51.5 NC_004084.1 + 2675 0.69 0.734051
Target:  5'- uUCGAGcCGGUAAaggaacGCGCGACGAUu -3'
miRNA:   3'- uAGCUCuGCCGUUguu---CGUGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 3380 0.69 0.732959
Target:  5'- -gUGaAGAUGGCGGagcuccuCGAGCACAACGAg -3'
miRNA:   3'- uaGC-UCUGCCGUU-------GUUCGUGUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 3500 0.79 0.245383
Target:  5'- gAUCGAGACGGCGagcaguACGAGCGCGucuGgGACu -3'
miRNA:   3'- -UAGCUCUGCCGU------UGUUCGUGU---UgCUG- -5'
16506 3' -51.5 NC_004084.1 + 4255 0.74 0.430733
Target:  5'- cUCGAGuuccGCGGCAgaaACGAGCACGacauccucaaaguccACGACg -3'
miRNA:   3'- uAGCUC----UGCCGU---UGUUCGUGU---------------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 4847 0.7 0.689675
Target:  5'- -gCGAGcacaucCGGCAccuccACAAGCAgGACGACc -3'
miRNA:   3'- uaGCUCu-----GCCGU-----UGUUCGUgUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 5036 0.69 0.712031
Target:  5'- gAUCGAgGAUGGCGACua-CACgGACGACu -3'
miRNA:   3'- -UAGCU-CUGCCGUUGuucGUG-UUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 5200 0.73 0.531618
Target:  5'- -aCGAGGCGGCAGgcAGCACGcucgagACGAUc -3'
miRNA:   3'- uaGCUCUGCCGUUguUCGUGU------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 5441 0.75 0.379136
Target:  5'- gAUCGcGAuCGGCGACcAGCGCAcucGCGACg -3'
miRNA:   3'- -UAGCuCU-GCCGUUGuUCGUGU---UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 6590 0.66 0.869578
Target:  5'- uUCGAGAgUGGCGACAgucggcgGGCGCGGagguagGACu -3'
miRNA:   3'- uAGCUCU-GCCGUUGU-------UCGUGUUg-----CUG- -5'
16506 3' -51.5 NC_004084.1 + 7453 0.75 0.416961
Target:  5'- cUCGGaguccGACGGCGACucGAGCGgCGACGGCg -3'
miRNA:   3'- uAGCU-----CUGCCGUUG--UUCGU-GUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 8155 0.67 0.815769
Target:  5'- cGUCGAGgaccucgccgccaACGGCGACGAGgACGcagAgGACu -3'
miRNA:   3'- -UAGCUC-------------UGCCGUUGUUCgUGU---UgCUG- -5'
16506 3' -51.5 NC_004084.1 + 8970 0.68 0.766225
Target:  5'- -aCGaAGACGGCGggACGAGgGCAGCuACg -3'
miRNA:   3'- uaGC-UCUGCCGU--UGUUCgUGUUGcUG- -5'
16506 3' -51.5 NC_004084.1 + 10018 0.66 0.878467
Target:  5'- -cCGAGAUGGCGGCcacgauGCcGCGuCGACg -3'
miRNA:   3'- uaGCUCUGCCGUUGuu----CG-UGUuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.