Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16566 | 5' | -49.7 | NC_004117.1 | + | 49568 | 0.67 | 0.991618 |
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Target: 5'- gUGCGCGACAUgacgGUgagcuugagacgACCGACAGGUu--- -3' miRNA: 3'- -ACGCGUUGUG----CA------------UGGCUGUUCGuuuu -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 43218 | 0.66 | 0.995394 |
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Target: 5'- cGUGCGGCugGcauCCGACAGGa---- -3' miRNA: 3'- aCGCGUUGugCau-GGCUGUUCguuuu -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 42150 | 0.69 | 0.97445 |
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Target: 5'- uUGCGCGACAC--AUCGACAuuggugccuAGCAAu- -3' miRNA: 3'- -ACGCGUUGUGcaUGGCUGU---------UCGUUuu -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 41986 | 0.73 | 0.844502 |
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Target: 5'- cGCGCAACACGUuucgcaGCCacuggGACGAGCu--- -3' miRNA: 3'- aCGCGUUGUGCA------UGG-----CUGUUCGuuuu -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 39485 | 0.7 | 0.957761 |
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Target: 5'- aGUGCGA-ACGUGCCGACAcuaaugcucGCAAAAu -3' miRNA: 3'- aCGCGUUgUGCAUGGCUGUu--------CGUUUU- -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 34028 | 0.68 | 0.979552 |
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Target: 5'- gGCGCAuuACAUuUGCaCGAUAAGCGAc- -3' miRNA: 3'- aCGCGU--UGUGcAUG-GCUGUUCGUUuu -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 29734 | 0.68 | 0.983856 |
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Target: 5'- uUGUuuuCAACAcCGUaACCGACGAGCAAc- -3' miRNA: 3'- -ACGc--GUUGU-GCA-UGGCUGUUCGUUuu -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 19235 | 1.07 | 0.013832 |
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Target: 5'- uUGCGCAACACGUACCGACAAGCAAAAu -3' miRNA: 3'- -ACGCGUUGUGCAUGGCUGUUCGUUUU- -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 14773 | 0.68 | 0.979552 |
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Target: 5'- -uCGCuuguuACACaGgggACCGACAAGCAAAGu -3' miRNA: 3'- acGCGu----UGUG-Ca--UGGCUGUUCGUUUU- -5' |
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| 16566 | 5' | -49.7 | NC_004117.1 | + | 8294 | 0.68 | 0.979552 |
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Target: 5'- cGCGCGuguacgauACACGUGCCGAUuacguGCu--- -3' miRNA: 3'- aCGCGU--------UGUGCAUGGCUGuu---CGuuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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