miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16570 3' -46.1 NC_004117.1 + 80362 0.66 0.999978
Target:  5'- -aUGUAGuuGAUGCCAAUCuugcgcaaauaccauAACACCa -3'
miRNA:   3'- ugGCAUUugUUACGGUUAG---------------UUGUGGa -5'
16570 3' -46.1 NC_004117.1 + 38427 0.66 0.999975
Target:  5'- uCCGUAAAUuuUGCCA--CGGCACa- -3'
miRNA:   3'- uGGCAUUUGuuACGGUuaGUUGUGga -5'
16570 3' -46.1 NC_004117.1 + 98689 0.66 0.999965
Target:  5'- uGCCGgc-GCucAUG-CGGUCAGCACCUu -3'
miRNA:   3'- -UGGCauuUGu-UACgGUUAGUUGUGGA- -5'
16570 3' -46.1 NC_004117.1 + 28965 0.66 0.999937
Target:  5'- gACCaaGAACGAggugGUCAAUCGucACACCg -3'
miRNA:   3'- -UGGcaUUUGUUa---CGGUUAGU--UGUGGa -5'
16570 3' -46.1 NC_004117.1 + 5959 0.66 0.999937
Target:  5'- cGCCGUGAACAGcugcUGCCuccgcUAGCGCg- -3'
miRNA:   3'- -UGGCAUUUGUU----ACGGuua--GUUGUGga -5'
16570 3' -46.1 NC_004117.1 + 134942 0.67 0.999916
Target:  5'- gAUCGUAAcCAAaGCCGAcaacgcUCGACACUUg -3'
miRNA:   3'- -UGGCAUUuGUUaCGGUU------AGUUGUGGA- -5'
16570 3' -46.1 NC_004117.1 + 71139 0.67 0.999889
Target:  5'- -gUGUGcaaAACAAUGCCAaaGUCAACGgCg -3'
miRNA:   3'- ugGCAU---UUGUUACGGU--UAGUUGUgGa -5'
16570 3' -46.1 NC_004117.1 + 107811 0.67 0.999889
Target:  5'- gGuuGUAuuauauGCGGUGCCAucAUCGcCGCCUg -3'
miRNA:   3'- -UggCAUu-----UGUUACGGU--UAGUuGUGGA- -5'
16570 3' -46.1 NC_004117.1 + 69230 0.67 0.999811
Target:  5'- cGCUGUuu-CAAcGCCGA-CGACACCa -3'
miRNA:   3'- -UGGCAuuuGUUaCGGUUaGUUGUGGa -5'
16570 3' -46.1 NC_004117.1 + 113642 0.67 0.999811
Target:  5'- uGCCGcaggUGAACuuUGCCAAcgaCAugACCUg -3'
miRNA:   3'- -UGGC----AUUUGuuACGGUUa--GUugUGGA- -5'
16570 3' -46.1 NC_004117.1 + 79453 0.67 0.999811
Target:  5'- gGCCGUAAGCAAUGUUGA---GCGCg- -3'
miRNA:   3'- -UGGCAUUUGUUACGGUUaguUGUGga -5'
16570 3' -46.1 NC_004117.1 + 113061 0.67 0.999811
Target:  5'- cUCGUAua-AGUGCCG-UCAGCACUa -3'
miRNA:   3'- uGGCAUuugUUACGGUuAGUUGUGGa -5'
16570 3' -46.1 NC_004117.1 + 45865 0.67 0.999756
Target:  5'- gACCGccuugGAACGAUGCCAAcCAAUguACUg -3'
miRNA:   3'- -UGGCa----UUUGUUACGGUUaGUUG--UGGa -5'
16570 3' -46.1 NC_004117.1 + 138155 0.67 0.999756
Target:  5'- cGCCGauuguCGAcUGCCAAUCGACAUg- -3'
miRNA:   3'- -UGGCauuu-GUU-ACGGUUAGUUGUGga -5'
16570 3' -46.1 NC_004117.1 + 133557 0.67 0.999756
Target:  5'- uCCGUGGACAAUcaaCCAAUCGAUggcgggcaACCg -3'
miRNA:   3'- uGGCAUUUGUUAc--GGUUAGUUG--------UGGa -5'
16570 3' -46.1 NC_004117.1 + 39044 0.68 0.999604
Target:  5'- cAUCGUAuuuuCuguGUGCCGGUuCAACACCc -3'
miRNA:   3'- -UGGCAUuu--Gu--UACGGUUA-GUUGUGGa -5'
16570 3' -46.1 NC_004117.1 + 5490 0.68 0.999501
Target:  5'- cCCGUcAAACAcGUGCUGgacaucaauGUCAACACCa -3'
miRNA:   3'- uGGCA-UUUGU-UACGGU---------UAGUUGUGGa -5'
16570 3' -46.1 NC_004117.1 + 55893 0.68 0.999501
Target:  5'- aACCGUAaauguAACAuggGCgGcAUCAACGCCg -3'
miRNA:   3'- -UGGCAU-----UUGUua-CGgU-UAGUUGUGGa -5'
16570 3' -46.1 NC_004117.1 + 93055 0.68 0.999428
Target:  5'- gAUUGUAAAUAGUGCCuucgccgucugguauGggCAGCACCa -3'
miRNA:   3'- -UGGCAUUUGUUACGG---------------UuaGUUGUGGa -5'
16570 3' -46.1 NC_004117.1 + 88504 0.68 0.999222
Target:  5'- --aGUAAacgcaGCAAUGCCAGUCAACGa-- -3'
miRNA:   3'- uggCAUU-----UGUUACGGUUAGUUGUgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.