Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16570 | 3' | -46.1 | NC_004117.1 | + | 10393 | 0.69 | 0.99853 |
Target: 5'- cACCGuUGAcgcucgagaguauGCAcgGCCucAUCGACACCg -3' miRNA: 3'- -UGGC-AUU-------------UGUuaCGGu-UAGUUGUGGa -5' |
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16570 | 3' | -46.1 | NC_004117.1 | + | 96404 | 0.69 | 0.998251 |
Target: 5'- aGCCGUGcgcgauucACGGUGCCGG-CuACACCUa -3' miRNA: 3'- -UGGCAUu-------UGUUACGGUUaGuUGUGGA- -5' |
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16570 | 3' | -46.1 | NC_004117.1 | + | 74975 | 0.69 | 0.998251 |
Target: 5'- uCCGUAGACAAaucgGCCGAacgaUCAAUuuGCCg -3' miRNA: 3'- uGGCAUUUGUUa---CGGUU----AGUUG--UGGa -5' |
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16570 | 3' | -46.1 | NC_004117.1 | + | 146618 | 0.7 | 0.996226 |
Target: 5'- uGCCGUGGACGAcuuuagcauUGCCGG-CAugauuuacguuggcGCACCUa -3' miRNA: 3'- -UGGCAUUUGUU---------ACGGUUaGU--------------UGUGGA- -5' |
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16570 | 3' | -46.1 | NC_004117.1 | + | 3854 | 0.72 | 0.99092 |
Target: 5'- uGCCGUAGuuuc-GCCAcccGUCGACGCCg -3' miRNA: 3'- -UGGCAUUuguuaCGGU---UAGUUGUGGa -5' |
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16570 | 3' | -46.1 | NC_004117.1 | + | 9069 | 0.73 | 0.980286 |
Target: 5'- aACCGUcaagaaAAACGuaaGUGCaaaGAUCAACACCa -3' miRNA: 3'- -UGGCA------UUUGU---UACGg--UUAGUUGUGGa -5' |
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16570 | 3' | -46.1 | NC_004117.1 | + | 29466 | 0.77 | 0.876292 |
Target: 5'- uGCCGUGGACGcUGUCGAUCu-CACCg -3' miRNA: 3'- -UGGCAUUUGUuACGGUUAGuuGUGGa -5' |
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16570 | 3' | -46.1 | NC_004117.1 | + | 57995 | 1.09 | 0.02424 |
Target: 5'- cACCGUAAACAAUGCCAAUCAACACCUa -3' miRNA: 3'- -UGGCAUUUGUUACGGUUAGUUGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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