miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16572 5' -48.9 NC_004117.1 + 114710 0.66 0.999303
Target:  5'- gGCCGAGGacg-CAGCG-CAGUuuGAACAa -3'
miRNA:   3'- -CGGCUUCgcuaGUUGCuGUCG--UUUGU- -5'
16572 5' -48.9 NC_004117.1 + 126399 0.66 0.999141
Target:  5'- uGCCu--GCG-UCGAUGGCAGCGcgAACGc -3'
miRNA:   3'- -CGGcuuCGCuAGUUGCUGUCGU--UUGU- -5'
16572 5' -48.9 NC_004117.1 + 49899 0.66 0.999141
Target:  5'- -gUGAAGCGA-CAACGACGaugucugccGCAcGCAa -3'
miRNA:   3'- cgGCUUCGCUaGUUGCUGU---------CGUuUGU- -5'
16572 5' -48.9 NC_004117.1 + 74838 0.66 0.999141
Target:  5'- aGCUGuuuaacauGGCGAUgAACGuuucguUAGCGGACAa -3'
miRNA:   3'- -CGGCu-------UCGCUAgUUGCu-----GUCGUUUGU- -5'
16572 5' -48.9 NC_004117.1 + 113642 0.66 0.998949
Target:  5'- uGCCGcAGGUGAacuuugcCAACGACaugaccuggcGGCGAGCGu -3'
miRNA:   3'- -CGGC-UUCGCUa------GUUGCUG----------UCGUUUGU- -5'
16572 5' -48.9 NC_004117.1 + 78083 0.66 0.99872
Target:  5'- cUUGGAGCGAggCAACGAaauUAGCAAAa- -3'
miRNA:   3'- cGGCUUCGCUa-GUUGCU---GUCGUUUgu -5'
16572 5' -48.9 NC_004117.1 + 132184 0.66 0.99872
Target:  5'- uGCCGAuGCGAuauuUUAGgGAgGGCGAAUu -3'
miRNA:   3'- -CGGCUuCGCU----AGUUgCUgUCGUUUGu -5'
16572 5' -48.9 NC_004117.1 + 135931 0.66 0.998643
Target:  5'- aGCCGAAguugcuuacgagcuGCGAgaaAGCGGCA-CAGGCAu -3'
miRNA:   3'- -CGGCUU--------------CGCUag-UUGCUGUcGUUUGU- -5'
16572 5' -48.9 NC_004117.1 + 30358 0.66 0.998563
Target:  5'- uGCCGuAGCGAcaaugucuaaauuuuUCGGCGACAacauuGCucGCAu -3'
miRNA:   3'- -CGGCuUCGCU---------------AGUUGCUGU-----CGuuUGU- -5'
16572 5' -48.9 NC_004117.1 + 102821 0.67 0.997919
Target:  5'- cGCCGAucGCGAUguACGAguacacguguuuggaCAGCAcGACGu -3'
miRNA:   3'- -CGGCUu-CGCUAguUGCU---------------GUCGU-UUGU- -5'
16572 5' -48.9 NC_004117.1 + 57932 0.67 0.997642
Target:  5'- aUCGAGGCGAacgugaccuacgccUgGGCGAUGGUGAACGg -3'
miRNA:   3'- cGGCUUCGCU--------------AgUUGCUGUCGUUUGU- -5'
16572 5' -48.9 NC_004117.1 + 47602 0.67 0.997336
Target:  5'- -aCGAGGCGAUgAAUuACGGCAGuCAu -3'
miRNA:   3'- cgGCUUCGCUAgUUGcUGUCGUUuGU- -5'
16572 5' -48.9 NC_004117.1 + 20996 0.67 0.99729
Target:  5'- aGCCGGAGCGGUUAAuaaauuuUGACuuGGCuuGAACu -3'
miRNA:   3'- -CGGCUUCGCUAGUU-------GCUG--UCG--UUUGu -5'
16572 5' -48.9 NC_004117.1 + 62060 0.68 0.994886
Target:  5'- gGCUuguGGCGAuUCAACGAUAGCAc--- -3'
miRNA:   3'- -CGGcu-UCGCU-AGUUGCUGUCGUuugu -5'
16572 5' -48.9 NC_004117.1 + 47473 0.68 0.994049
Target:  5'- cGCCGAAGCGGUUugucuauccaAGCG-UAGCAu--- -3'
miRNA:   3'- -CGGCUUCGCUAG----------UUGCuGUCGUuugu -5'
16572 5' -48.9 NC_004117.1 + 27997 0.68 0.993106
Target:  5'- uGCCGGAGCGuu--ACGACGugcGCAAAg- -3'
miRNA:   3'- -CGGCUUCGCuaguUGCUGU---CGUUUgu -5'
16572 5' -48.9 NC_004117.1 + 30149 0.68 0.993106
Target:  5'- uGCCGcAAGUuugcauUCucCGACGGCAAACAu -3'
miRNA:   3'- -CGGC-UUCGcu----AGuuGCUGUCGUUUGU- -5'
16572 5' -48.9 NC_004117.1 + 58927 0.68 0.993106
Target:  5'- aCCGAcugcauGGCGAUCGuuGCGgcACAGgGAACAu -3'
miRNA:   3'- cGGCU------UCGCUAGU--UGC--UGUCgUUUGU- -5'
16572 5' -48.9 NC_004117.1 + 133005 0.7 0.979224
Target:  5'- gGCCGgcGUGGuaguguccaacgUCAaaauuggcuggauuuACGACGGCAAACGa -3'
miRNA:   3'- -CGGCuuCGCU------------AGU---------------UGCUGUCGUUUGU- -5'
16572 5' -48.9 NC_004117.1 + 129835 0.73 0.927324
Target:  5'- cGCCGuAGGCuGAgauGACGACGGCAAugGu -3'
miRNA:   3'- -CGGC-UUCG-CUag-UUGCUGUCGUUugU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.