miRNA: 3'- -CGGCu--UCGCUAGU------UGCUGUCGUU--UGU- -5'
miRNA: 3'- -CgGCUUC-GCUAGUUgCUGUCGUUUGu -5'
miRNA: 3'- -CGGCUUCGCUAGUu--GCUGUCGuuUGU- -5'
miRNA: 3'- -CGGCUUCGCUAGUUGCUGUCGUUUGU- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16572 | 5' | -48.9 | NC_004117.1 | + | 36580 | 0.74 | 0.903027 |
|
Target: 5'- gGCCGuuuGGCGGUCGgcguuuACGACAGUGGucGCAu -3' miRNA: 3'- -CGGCu--UCGCUAGU------UGCUGUCGUU--UGU- -5' |
|||||||
| 16572 | 5' | -48.9 | NC_004117.1 | + | 132244 | 0.75 | 0.842476 |
|
Target: 5'- cGgCGGAGaCGAUCAA-GACGGCGAACu -3' miRNA: 3'- -CgGCUUC-GCUAGUUgCUGUCGUUUGu -5' |
|||||||
| 16572 | 5' | -48.9 | NC_004117.1 | + | 34351 | 0.76 | 0.797623 |
|
Target: 5'- aGUCGAAGCGAUCGugcCGAUGGUcgGCAu -3' miRNA: 3'- -CGGCUUCGCUAGUu--GCUGUCGuuUGU- -5' |
|||||||
| 16572 | 5' | -48.9 | NC_004117.1 | + | 59232 | 1.12 | 0.010283 |
|
Target: 5'- gGCCGAAGCGAUCAACGACAGCAAACAu -3' miRNA: 3'- -CGGCUUCGCUAGUUGCUGUCGUUUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home