miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16626 5' -48.3 NC_004156.1 + 149528 0.66 0.999904
Target:  5'- cGCcUCCUCGU-ACACCGACAccaccuUCUa -3'
miRNA:   3'- aCGuAGGGGUAuUGUGGUUGUu-----AGAg -5'
16626 5' -48.3 NC_004156.1 + 186220 0.66 0.999904
Target:  5'- aGCAUCUCCAUuGCuAgCAACGAUgCUg -3'
miRNA:   3'- aCGUAGGGGUAuUG-UgGUUGUUA-GAg -5'
16626 5' -48.3 NC_004156.1 + 44452 0.66 0.999875
Target:  5'- aGCA-CCUCA-AGCACCGGCA-UCUg -3'
miRNA:   3'- aCGUaGGGGUaUUGUGGUUGUuAGAg -5'
16626 5' -48.3 NC_004156.1 + 190551 0.66 0.999793
Target:  5'- aUGCAUCU----GACGCCGuugcuCAAUCUCa -3'
miRNA:   3'- -ACGUAGGgguaUUGUGGUu----GUUAGAG- -5'
16626 5' -48.3 NC_004156.1 + 128256 0.66 0.999793
Target:  5'- gGCAUCaagauuuuaCCGgccuucauCACCAACAAUCUg -3'
miRNA:   3'- aCGUAGg--------GGUauu-----GUGGUUGUUAGAg -5'
16626 5' -48.3 NC_004156.1 + 130612 0.66 0.999737
Target:  5'- gUGCAUCCgCAgauauuguuUAGCA--AACAAUCUCu -3'
miRNA:   3'- -ACGUAGGgGU---------AUUGUggUUGUUAGAG- -5'
16626 5' -48.3 NC_004156.1 + 178779 0.66 0.999737
Target:  5'- aUGCAUCCaCCGgaGAUGCCAGC--UCUUu -3'
miRNA:   3'- -ACGUAGG-GGUa-UUGUGGUUGuuAGAG- -5'
16626 5' -48.3 NC_004156.1 + 48942 0.67 0.999581
Target:  5'- aUGCuauugCCCCAgcucGACcCCAgaguguACAAUCUCa -3'
miRNA:   3'- -ACGua---GGGGUa---UUGuGGU------UGUUAGAG- -5'
16626 5' -48.3 NC_004156.1 + 84082 0.67 0.999351
Target:  5'- gGCcgaGUCuCCCAUGACACUuuGCAaaucuacagAUCUCg -3'
miRNA:   3'- aCG---UAG-GGGUAUUGUGGu-UGU---------UAGAG- -5'
16626 5' -48.3 NC_004156.1 + 83384 0.67 0.9992
Target:  5'- aGC--CCCCAUGACGCUAACGuuggaaAUgUCa -3'
miRNA:   3'- aCGuaGGGGUAUUGUGGUUGU------UAgAG- -5'
16626 5' -48.3 NC_004156.1 + 207210 0.68 0.998222
Target:  5'- cGUAUCCUCuacUGGCGCCGuaccgagugcccaGCAAUCUg -3'
miRNA:   3'- aCGUAGGGGu--AUUGUGGU-------------UGUUAGAg -5'
16626 5' -48.3 NC_004156.1 + 163696 0.68 0.997907
Target:  5'- aGC-UCCUCgAUGACGCCcuugacaaaGACAGUCUUg -3'
miRNA:   3'- aCGuAGGGG-UAUUGUGG---------UUGUUAGAG- -5'
16626 5' -48.3 NC_004156.1 + 164615 0.69 0.997504
Target:  5'- aGCAcCCCCAU--CGCCGACAAgcCUUg -3'
miRNA:   3'- aCGUaGGGGUAuuGUGGUUGUUa-GAG- -5'
16626 5' -48.3 NC_004156.1 + 146331 0.69 0.995889
Target:  5'- cGCuaaaAUCUCUAgcuACACCAACAGUgCUCu -3'
miRNA:   3'- aCG----UAGGGGUau-UGUGGUUGUUA-GAG- -5'
16626 5' -48.3 NC_004156.1 + 179026 0.69 0.995889
Target:  5'- gGCAUCUCCGguggauGCAUCucuACAAUCUa -3'
miRNA:   3'- aCGUAGGGGUau----UGUGGu--UGUUAGAg -5'
16626 5' -48.3 NC_004156.1 + 47947 0.69 0.99519
Target:  5'- uUGCAUCaauCCaAUAAUACUAACAAuaauUCUCa -3'
miRNA:   3'- -ACGUAGg--GG-UAUUGUGGUUGUU----AGAG- -5'
16626 5' -48.3 NC_004156.1 + 114893 0.7 0.9925
Target:  5'- cGCAUCaCCUGccGCAUCAACGAUCg- -3'
miRNA:   3'- aCGUAG-GGGUauUGUGGUUGUUAGag -5'
16626 5' -48.3 NC_004156.1 + 136923 0.71 0.983626
Target:  5'- aGCGUgUCCAUAACGCCAcCGAUgCUg -3'
miRNA:   3'- aCGUAgGGGUAUUGUGGUuGUUA-GAg -5'
16626 5' -48.3 NC_004156.1 + 12560 0.72 0.981585
Target:  5'- cGCAUCCUCA-AACuGCCAACAgcAUCUa -3'
miRNA:   3'- aCGUAGGGGUaUUG-UGGUUGU--UAGAg -5'
16626 5' -48.3 NC_004156.1 + 199383 0.72 0.981585
Target:  5'- -cCGUCUgCGUGAUGCCGACAuugGUCUCg -3'
miRNA:   3'- acGUAGGgGUAUUGUGGUUGU---UAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.