miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16630 3' -48.7 NC_004156.1 + 143257 0.66 0.999779
Target:  5'- aCgUGCUGGGAGUGCGuCUCg-GCg-- -3'
miRNA:   3'- -GgAUGAUUCUCACGUuGAGgaCGauu -5'
16630 3' -48.7 NC_004156.1 + 159343 0.66 0.999645
Target:  5'- aUCUACUAAGAcgucgGUGUAGCUuuuuaaaguuggCCUcGCUGAa -3'
miRNA:   3'- -GGAUGAUUCU-----CACGUUGA------------GGA-CGAUU- -5'
16630 3' -48.7 NC_004156.1 + 130176 0.67 0.998471
Target:  5'- aCUGCUGAGGGUGUAcGCUCacaCUGAc -3'
miRNA:   3'- gGAUGAUUCUCACGU-UGAGgacGAUU- -5'
16630 3' -48.7 NC_004156.1 + 39634 0.68 0.997374
Target:  5'- --aAC-AAGAGUaCAACUCCUGUUAAg -3'
miRNA:   3'- ggaUGaUUCUCAcGUUGAGGACGAUU- -5'
16630 3' -48.7 NC_004156.1 + 210484 0.7 0.98668
Target:  5'- cCCUGCUGcGGcUGCGugagcgagaacgGCUCCUGCUGc -3'
miRNA:   3'- -GGAUGAUuCUcACGU------------UGAGGACGAUu -5'
16630 3' -48.7 NC_004156.1 + 19794 0.77 0.809384
Target:  5'- aCCUGCUcGGAGU-CuugauGCUCCUGCUGAg -3'
miRNA:   3'- -GGAUGAuUCUCAcGu----UGAGGACGAUU- -5'
16630 3' -48.7 NC_004156.1 + 39656 0.78 0.75158
Target:  5'- aCCUACcAAGAGUGCAACUCCa----- -3'
miRNA:   3'- -GGAUGaUUCUCACGUUGAGGacgauu -5'
16630 3' -48.7 NC_004156.1 + 39716 0.86 0.396116
Target:  5'- aCCUACUAAGAGcaCAACUCCUGUUAAg -3'
miRNA:   3'- -GGAUGAUUCUCacGUUGAGGACGAUU- -5'
16630 3' -48.7 NC_004156.1 + 39755 0.87 0.34543
Target:  5'- uCCUGCUAAGAGUGCAACUCCa----- -3'
miRNA:   3'- -GGAUGAUUCUCACGUUGAGGacgauu -5'
16630 3' -48.7 NC_004156.1 + 39791 1.1 0.016297
Target:  5'- aCCUACUAAGAGUGCAACUCCUGCUAAg -3'
miRNA:   3'- -GGAUGAUUCUCACGUUGAGGACGAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.