miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16633 5' -44.6 NC_004156.1 + 184591 0.66 1
Target:  5'- gAC-CACGGUC----AUcGAGCAGGCg -3'
miRNA:   3'- aUGuGUGCCAGauuuUGaCUUGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 29051 0.67 1
Target:  5'- aUugGCAU-GUUUGAGACUG-ACGAGUa -3'
miRNA:   3'- -AugUGUGcCAGAUUUUGACuUGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 39188 0.66 1
Target:  5'- aUACAgGCGGUggugaaucgauucCUGGGuGCUGuGCAAGCc -3'
miRNA:   3'- -AUGUgUGCCA-------------GAUUU-UGACuUGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 69420 0.66 1
Target:  5'- aGCuuugaACGGUCUGcguGugUGGGCAAGa -3'
miRNA:   3'- aUGug---UGCCAGAUu--UugACUUGUUCg -5'
16633 5' -44.6 NC_004156.1 + 133828 0.66 1
Target:  5'- ---gUACGGUCUGAGACUGuu---GCc -3'
miRNA:   3'- auguGUGCCAGAUUUUGACuuguuCG- -5'
16633 5' -44.6 NC_004156.1 + 110472 0.66 1
Target:  5'- gUACugGaCGGUCUGcacGCUGAuCAGGa -3'
miRNA:   3'- -AUGugU-GCCAGAUuu-UGACUuGUUCg -5'
16633 5' -44.6 NC_004156.1 + 85301 0.66 1
Target:  5'- cGCACcuCGGUCUAucACaaaaUGAACAAuauGCa -3'
miRNA:   3'- aUGUGu-GCCAGAUuuUG----ACUUGUU---CG- -5'
16633 5' -44.6 NC_004156.1 + 70415 0.66 1
Target:  5'- aACGCuAaaGUCUAAA-CUGAGCGAGg -3'
miRNA:   3'- aUGUG-UgcCAGAUUUuGACUUGUUCg -5'
16633 5' -44.6 NC_004156.1 + 14520 0.66 1
Target:  5'- --uGCAUGGUCcaguuGACUuuGCGAGCa -3'
miRNA:   3'- augUGUGCCAGauu--UUGAcuUGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 49126 0.66 1
Target:  5'- gACACACGGuuguugauucugauUCUGAuuCUGAGucUGAGUa -3'
miRNA:   3'- aUGUGUGCC--------------AGAUUuuGACUU--GUUCG- -5'
16633 5' -44.6 NC_004156.1 + 170046 0.67 0.999999
Target:  5'- gACaACACGaGUCUGguAAGCUuuguACAAGCg -3'
miRNA:   3'- aUG-UGUGC-CAGAU--UUUGAcu--UGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 213373 0.67 0.999999
Target:  5'- --uGCACGGUC-GAGACUauuacaaGAGCGAuGCa -3'
miRNA:   3'- augUGUGCCAGaUUUUGA-------CUUGUU-CG- -5'
16633 5' -44.6 NC_004156.1 + 33623 0.67 0.999999
Target:  5'- uUACACGaguccacCGaGUCUAAGAUUGcACGAGUc -3'
miRNA:   3'- -AUGUGU-------GC-CAGAUUUUGACuUGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 158789 0.67 0.999999
Target:  5'- gUGCACACuGGaUCcGAAACUGGuacuuuuGCAGGUu -3'
miRNA:   3'- -AUGUGUG-CC-AGaUUUUGACU-------UGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 14501 0.67 0.999998
Target:  5'- uUAUACAUGGUauuuaUUAAAACU-AGCAAGUa -3'
miRNA:   3'- -AUGUGUGCCA-----GAUUUUGAcUUGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 19700 0.67 0.999998
Target:  5'- aGCAC-CGGUCgauuggucuuGAGCUGA--GAGCg -3'
miRNA:   3'- aUGUGuGCCAGau--------UUUGACUugUUCG- -5'
16633 5' -44.6 NC_004156.1 + 157815 0.68 0.999997
Target:  5'- aACACAUa-UUUGGAAgUGAACGAGCc -3'
miRNA:   3'- aUGUGUGccAGAUUUUgACUUGUUCG- -5'
16633 5' -44.6 NC_004156.1 + 186193 0.68 0.999992
Target:  5'- gGCACugGcaCUGGuACUGGACuAGCa -3'
miRNA:   3'- aUGUGugCcaGAUUuUGACUUGuUCG- -5'
16633 5' -44.6 NC_004156.1 + 180431 0.68 0.999992
Target:  5'- cACAgACGGaUCgcAAACUGGACAuuuccguGCa -3'
miRNA:   3'- aUGUgUGCC-AGauUUUGACUUGUu------CG- -5'
16633 5' -44.6 NC_004156.1 + 42534 0.69 0.999989
Target:  5'- cUGgGCACGGUCgguguccGugUGGGCAAGa -3'
miRNA:   3'- -AUgUGUGCCAGauu----UugACUUGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.