miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16634 3' -54.1 NC_004156.1 + 59105 0.66 0.956763
Target:  5'- gGACGaagAGAGUcguaagGAGGCUGcuGGUAGCAc -3'
miRNA:   3'- -UUGCa--UUUCGa-----CUCCGACu-CCGUCGU- -5'
16634 3' -54.1 NC_004156.1 + 57996 0.67 0.934626
Target:  5'- aAACGcAAAGCgGAGGCUGAaGCuGCc -3'
miRNA:   3'- -UUGCaUUUCGaCUCCGACUcCGuCGu -5'
16634 3' -54.1 NC_004156.1 + 58026 0.67 0.934626
Target:  5'- aAACGcAAAGCgGAGGCUGAaGCuGCc -3'
miRNA:   3'- -UUGCaUUUCGaCUCCGACUcCGuCGu -5'
16634 3' -54.1 NC_004156.1 + 57735 0.68 0.912527
Target:  5'- aAACGaAAAGCgGAGGCUGAaGCuGCu -3'
miRNA:   3'- -UUGCaUUUCGaCUCCGACUcCGuCGu -5'
16634 3' -54.1 NC_004156.1 + 57825 0.68 0.912527
Target:  5'- aAACGcAAAGCgGAGGCUGAaGCuGCu -3'
miRNA:   3'- -UUGCaUUUCGaCUCCGACUcCGuCGu -5'
16634 3' -54.1 NC_004156.1 + 58269 0.68 0.912527
Target:  5'- aAGCGcAAAGCgGAGGCUGAaGCuGCu -3'
miRNA:   3'- -UUGCaUUUCGaCUCCGACUcCGuCGu -5'
16634 3' -54.1 NC_004156.1 + 58544 0.7 0.856865
Target:  5'- aAGCGaAAGGCUGAuGCUGAaGCAGCc -3'
miRNA:   3'- -UUGCaUUUCGACUcCGACUcCGUCGu -5'
16634 3' -54.1 NC_004156.1 + 58511 0.7 0.823851
Target:  5'- aAACGUAAAGCcGAuGCUGAaGCAGCc -3'
miRNA:   3'- -UUGCAUUUCGaCUcCGACUcCGUCGu -5'
16634 3' -54.1 NC_004156.1 + 85640 0.72 0.72
Target:  5'- aGACGUAAAGCggGAGGCuccuuUGAagcGGUAGCGu -3'
miRNA:   3'- -UUGCAUUUCGa-CUCCG-----ACU---CCGUCGU- -5'
16634 3' -54.1 NC_004156.1 + 58086 0.73 0.658585
Target:  5'- aAACGUAAAGCUGAGaUUGAaGCAGCc -3'
miRNA:   3'- -UUGCAUUUCGACUCcGACUcCGUCGu -5'
16634 3' -54.1 NC_004156.1 + 58625 0.74 0.617078
Target:  5'- aAACGUAAAGCcGAuGCUGAaGCAGCAa -3'
miRNA:   3'- -UUGCAUUUCGaCUcCGACUcCGUCGU- -5'
16634 3' -54.1 NC_004156.1 + 58571 0.74 0.617078
Target:  5'- aAACGUAAAGCcGAuGCUGAaGCAGCAa -3'
miRNA:   3'- -UUGCAUUUCGaCUcCGACUcCGUCGU- -5'
16634 3' -54.1 NC_004156.1 + 58478 0.74 0.617078
Target:  5'- aAACGUAAAGCcGAuGCUGAaGCAGCAa -3'
miRNA:   3'- -UUGCAUUUCGaCUcCGACUcCGUCGU- -5'
16634 3' -54.1 NC_004156.1 + 58389 0.75 0.596362
Target:  5'- aAACGcAAAGCgGAGGCUGAaGCAGCc -3'
miRNA:   3'- -UUGCaUUUCGaCUCCGACUcCGUCGu -5'
16634 3' -54.1 NC_004156.1 + 58119 0.75 0.596362
Target:  5'- aAACGcAAAGCgGAGGCUGAaGCAGCc -3'
miRNA:   3'- -UUGCaUUUCGaCUCCGACUcCGUCGu -5'
16634 3' -54.1 NC_004156.1 + 57672 0.75 0.565509
Target:  5'- aAACGUAAAGCcGAGGCUGAaGCuGCc -3'
miRNA:   3'- -UUGCAUUUCGaCUCCGACUcCGuCGu -5'
16634 3' -54.1 NC_004156.1 + 58056 0.76 0.525069
Target:  5'- aAACGUAAAGCgGAGGCUGAaGCuGCc -3'
miRNA:   3'- -UUGCAUUUCGaCUCCGACUcCGuCGu -5'
16634 3' -54.1 NC_004156.1 + 224714 0.78 0.429635
Target:  5'- uGAgGuUGAGGUUGAGGUUGAGGCAGUu -3'
miRNA:   3'- -UUgC-AUUUCGACUCCGACUCCGUCGu -5'
16634 3' -54.1 NC_004156.1 + 58179 0.85 0.170352
Target:  5'- aAACGUAAAGCcGAGGCUGAaGCGGCAg -3'
miRNA:   3'- -UUGCAUUUCGaCUCCGACUcCGUCGU- -5'
16634 3' -54.1 NC_004156.1 + 58239 0.85 0.170352
Target:  5'- aAACGUAAAGCcGAGGCUGAaGCGGCAg -3'
miRNA:   3'- -UUGCAUUUCGaCUCCGACUcCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.