miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16634 5' -52.2 NC_004156.1 + 75477 0.66 0.987081
Target:  5'- uGAU-CUGAAGCgcauAGCCGCCAagaaugAugGUGg -3'
miRNA:   3'- -CUAcGACUUCG----UCGGCGGU------UugCAUu -5'
16634 5' -52.2 NC_004156.1 + 226444 0.66 0.987081
Target:  5'- aGAUGC---AGCAGCCGCCGc-CGUc- -3'
miRNA:   3'- -CUACGacuUCGUCGGCGGUuuGCAuu -5'
16634 5' -52.2 NC_004156.1 + 58375 0.67 0.976955
Target:  5'- --gGCUGAAGCAGCCGa---ACGa-- -3'
miRNA:   3'- cuaCGACUUCGUCGGCgguuUGCauu -5'
16634 5' -52.2 NC_004156.1 + 58282 0.67 0.976955
Target:  5'- --gGCUGAAGCAGCaaaGCgcaAAGCGg-- -3'
miRNA:   3'- cuaCGACUUCGUCGg--CGg--UUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 59630 0.67 0.974373
Target:  5'- -uUGCUGAauaugaugaGGCGGCgGCCAAAgCGg-- -3'
miRNA:   3'- cuACGACU---------UCGUCGgCGGUUU-GCauu -5'
16634 5' -52.2 NC_004156.1 + 71160 0.67 0.974373
Target:  5'- -uUGUUGAAGCAGCUuCCAAccaGUGAg -3'
miRNA:   3'- cuACGACUUCGUCGGcGGUUug-CAUU- -5'
16634 5' -52.2 NC_004156.1 + 100000 0.68 0.954363
Target:  5'- -----gGAGGCuGUCGCCGAGCGUAc -3'
miRNA:   3'- cuacgaCUUCGuCGGCGGUUUGCAUu -5'
16634 5' -52.2 NC_004156.1 + 58312 0.68 0.968591
Target:  5'- cGAUGCgGAc---GCCGCUAAACGUAAa -3'
miRNA:   3'- -CUACGaCUucguCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 57844 0.68 0.954363
Target:  5'- --aGCUGAGGCugaGGCaGCCAAACGc-- -3'
miRNA:   3'- cuaCGACUUCG---UCGgCGGUUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 57754 0.7 0.92015
Target:  5'- --aGCUGAGGCugaGGCaGCCAAACGa-- -3'
miRNA:   3'- cuaCGACUUCG---UCGgCGGUUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 57781 0.7 0.914259
Target:  5'- aGAUGaacuAGCcGCCGCUAAACGUAAa -3'
miRNA:   3'- -CUACgacuUCGuCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58467 0.72 0.833728
Target:  5'- cGAUGCUGAAGCAGCaaaGCgAAAgGc-- -3'
miRNA:   3'- -CUACGACUUCGUCGg--CGgUUUgCauu -5'
16634 5' -52.2 NC_004156.1 + 58560 0.72 0.833728
Target:  5'- cGAUGCUGAAGCAGCaaaGCgAAAgGc-- -3'
miRNA:   3'- -CUACGACUUCGUCGg--CGgUUUgCauu -5'
16634 5' -52.2 NC_004156.1 + 58225 0.74 0.740335
Target:  5'- --gGCUGAAGCGGCaGCCAAACu--- -3'
miRNA:   3'- cuaCGACUUCGUCGgCGGUUUGcauu -5'
16634 5' -52.2 NC_004156.1 + 58165 0.74 0.740335
Target:  5'- --gGCUGAAGCGGCaGCCAAACu--- -3'
miRNA:   3'- cuaCGACUUCGUCGgCGGUUUGcauu -5'
16634 5' -52.2 NC_004156.1 + 58405 0.77 0.584591
Target:  5'- --gGCUGAGGCGGCaGCCAAACGc-- -3'
miRNA:   3'- cuaCGACUUCGUCGgCGGUUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 57691 0.79 0.473568
Target:  5'- aGAUGaacuAGCAGCCGCUAAACGUAAa -3'
miRNA:   3'- -CUACgacuUCGUCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58135 0.79 0.493055
Target:  5'- --gGCUGAAGCuGCCGCUAAACGc-- -3'
miRNA:   3'- cuaCGACUUCGuCGGCGGUUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 58012 0.79 0.493055
Target:  5'- --gGCUGAAGCuGCCGCUAAACGc-- -3'
miRNA:   3'- cuaCGACUUCGuCGGCGGUUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 57658 0.79 0.493055
Target:  5'- --gGCUGAAGCuGCCGCUAAACGc-- -3'
miRNA:   3'- cuaCGACUUCGuCGGCGGUUUGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.