Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16634 | 5' | -52.2 | NC_004156.1 | + | 57523 | 0.85 | 0.226817 |
Target: 5'- cGAUGCUGAAGCAGCCGaacgaAAACGUAu -3' miRNA: 3'- -CUACGACUUCGUCGGCgg---UUUGCAUu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57604 | 0.85 | 0.226817 |
Target: 5'- cGAUGCUGAAGCAGCCGaacgaAAACGUAu -3' miRNA: 3'- -CUACGACUUCGUCGGCgg---UUUGCAUu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57658 | 0.79 | 0.493055 |
Target: 5'- --gGCUGAAGCuGCCGCUAAACGc-- -3' miRNA: 3'- cuaCGACUUCGuCGGCGGUUUGCauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57691 | 0.79 | 0.473568 |
Target: 5'- aGAUGaacuAGCAGCCGCUAAACGUAAa -3' miRNA: 3'- -CUACgacuUCGUCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57754 | 0.7 | 0.92015 |
Target: 5'- --aGCUGAGGCugaGGCaGCCAAACGa-- -3' miRNA: 3'- cuaCGACUUCG---UCGgCGGUUUGCauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57781 | 0.7 | 0.914259 |
Target: 5'- aGAUGaacuAGCcGCCGCUAAACGUAAa -3' miRNA: 3'- -CUACgacuUCGuCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57844 | 0.68 | 0.954363 |
Target: 5'- --aGCUGAGGCugaGGCaGCCAAACGc-- -3' miRNA: 3'- cuaCGACUUCG---UCGgCGGUUUGCauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57871 | 1.07 | 0.010148 |
Target: 5'- cGAUGCUGAAGCAGCCGCCAAACGUAAa -3' miRNA: 3'- -CUACGACUUCGUCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57928 | 1.07 | 0.010148 |
Target: 5'- cGAUGCUGAAGCAGCCGCCAAACGUAAa -3' miRNA: 3'- -CUACGACUUCGUCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 57982 | 0.87 | 0.180391 |
Target: 5'- --gGCUGAAGCuGCCGCUAAACGUAAa -3' miRNA: 3'- cuaCGACUUCGuCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58012 | 0.79 | 0.493055 |
Target: 5'- --gGCUGAAGCuGCCGCUAAACGc-- -3' miRNA: 3'- cuaCGACUUCGuCGGCGGUUUGCauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58042 | 0.83 | 0.296861 |
Target: 5'- --gGCUGAAGCuGCCGCCAAACGc-- -3' miRNA: 3'- cuaCGACUUCGuCGGCGGUUUGCauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58078 | 0.89 | 0.135231 |
Target: 5'- --aGCUGAgauugaAGCAGCCGCCAAACGUAAa -3' miRNA: 3'- cuaCGACU------UCGUCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58105 | 0.87 | 0.185102 |
Target: 5'- --gGCUGAAGCAGCCgaaGCCAAACGUAa -3' miRNA: 3'- cuaCGACUUCGUCGG---CGGUUUGCAUu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58135 | 0.79 | 0.493055 |
Target: 5'- --gGCUGAAGCuGCCGCUAAACGc-- -3' miRNA: 3'- cuaCGACUUCGuCGGCGGUUUGCauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58165 | 0.74 | 0.740335 |
Target: 5'- --gGCUGAAGCGGCaGCCAAACu--- -3' miRNA: 3'- cuaCGACUUCGUCGgCGGUUUGcauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58195 | 0.91 | 0.097991 |
Target: 5'- --gGCUGAAGCuGCCGCCAAACGUAAa -3' miRNA: 3'- cuaCGACUUCGuCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58225 | 0.74 | 0.740335 |
Target: 5'- --gGCUGAAGCGGCaGCCAAACu--- -3' miRNA: 3'- cuaCGACUUCGUCGgCGGUUUGcauu -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58255 | 0.87 | 0.175787 |
Target: 5'- --gGCUGAAGCuGCUGCCAAACGUAAa -3' miRNA: 3'- cuaCGACUUCGuCGGCGGUUUGCAUU- -5' |
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16634 | 5' | -52.2 | NC_004156.1 | + | 58282 | 0.67 | 0.976955 |
Target: 5'- --gGCUGAAGCAGCaaaGCgcaAAGCGg-- -3' miRNA: 3'- cuaCGACUUCGUCGg--CGg--UUUGCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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