miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16634 5' -52.2 NC_004156.1 + 58312 0.68 0.968591
Target:  5'- cGAUGCgGAc---GCCGCUAAACGUAAa -3'
miRNA:   3'- -CUACGaCUucguCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58375 0.67 0.976955
Target:  5'- --gGCUGAAGCAGCCGa---ACGa-- -3'
miRNA:   3'- cuaCGACUUCGUCGGCgguuUGCauu -5'
16634 5' -52.2 NC_004156.1 + 58405 0.77 0.584591
Target:  5'- --gGCUGAGGCGGCaGCCAAACGc-- -3'
miRNA:   3'- cuaCGACUUCGUCGgCGGUUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 58440 0.82 0.326204
Target:  5'- uGAUGCUGAAG-AGCCgaaGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCgUCGG---CGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58467 0.72 0.833728
Target:  5'- cGAUGCUGAAGCAGCaaaGCgAAAgGc-- -3'
miRNA:   3'- -CUACGACUUCGUCGg--CGgUUUgCauu -5'
16634 5' -52.2 NC_004156.1 + 58500 0.96 0.049244
Target:  5'- cGAUGCUGAAGCAGCCgaaGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCGUCGG---CGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58533 0.95 0.05353
Target:  5'- uGAUGCUGAAGCAGCCgaaGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCGUCGG---CGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58560 0.72 0.833728
Target:  5'- cGAUGCUGAAGCAGCaaaGCgAAAgGc-- -3'
miRNA:   3'- -CUACGACUUCGUCGg--CGgUUUgCauu -5'
16634 5' -52.2 NC_004156.1 + 58614 0.82 0.352796
Target:  5'- cGAUGCUGAagcagcaaagcgcaaGGCAgaugaggacGCCGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACU---------------UCGU---------CGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 59630 0.67 0.974373
Target:  5'- -uUGCUGAauaugaugaGGCGGCgGCCAAAgCGg-- -3'
miRNA:   3'- cuACGACU---------UCGUCGgCGGUUU-GCauu -5'
16634 5' -52.2 NC_004156.1 + 71160 0.67 0.974373
Target:  5'- -uUGUUGAAGCAGCUuCCAAccaGUGAg -3'
miRNA:   3'- cuACGACUUCGUCGGcGGUUug-CAUU- -5'
16634 5' -52.2 NC_004156.1 + 75477 0.66 0.987081
Target:  5'- uGAU-CUGAAGCgcauAGCCGCCAagaaugAugGUGg -3'
miRNA:   3'- -CUAcGACUUCG----UCGGCGGU------UugCAUu -5'
16634 5' -52.2 NC_004156.1 + 100000 0.68 0.954363
Target:  5'- -----gGAGGCuGUCGCCGAGCGUAc -3'
miRNA:   3'- cuacgaCUUCGuCGGCGGUUUGCAUu -5'
16634 5' -52.2 NC_004156.1 + 226444 0.66 0.987081
Target:  5'- aGAUGC---AGCAGCCGCCGc-CGUc- -3'
miRNA:   3'- -CUACGacuUCGUCGGCGGUuuGCAuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.