miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16635 3' -54.5 NC_004156.1 + 58177 0.82 0.299944
Target:  5'- aCGUAAAGCcGAGGCUGAAGCgGCaGCc -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGaCGgCG- -5'
16635 3' -54.5 NC_004156.1 + 58204 1.02 0.017177
Target:  5'- --cAAAGCGGAGGCUGAAGCUGCCGCc -3'
miRNA:   3'- gcaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58237 0.82 0.299944
Target:  5'- aCGUAAAGCcGAGGCUGAAGCgGCaGCc -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGaCGgCG- -5'
16635 3' -54.5 NC_004156.1 + 58267 0.99 0.027272
Target:  5'- gCGcAAAGCGGAGGCUGAAGCUGCUGCc -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58294 0.77 0.51753
Target:  5'- aCGUAAAGCcGAGGCUGAAGCaGCa-- -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGaCGgcg -5'
16635 3' -54.5 NC_004156.1 + 58387 0.89 0.103564
Target:  5'- aCGcAAAGCGGAGGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 58417 0.92 0.067996
Target:  5'- aCGUAAAGCGGAGGCUGAGGCgGCaGCc -3'
miRNA:   3'- -GCAUUUCGCCUCCGACUUCGaCGgCG- -5'
16635 3' -54.5 NC_004156.1 + 58476 0.71 0.827407
Target:  5'- aCGUAAAGCcGAuGCUGAAGCaGCaaaGCg -3'
miRNA:   3'- -GCAUUUCGcCUcCGACUUCGaCGg--CG- -5'
16635 3' -54.5 NC_004156.1 + 58509 0.75 0.637132
Target:  5'- aCGUAAAGCcGAuGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCAUUUCGcCUcCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 58542 0.66 0.979747
Target:  5'- nCGaAAGGCuGAuGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCaUUUCGcCUcCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 58569 0.71 0.827407
Target:  5'- aCGUAAAGCcGAuGCUGAAGCaGCaaaGCg -3'
miRNA:   3'- -GCAUUUCGcCUcCGACUUCGaCGg--CG- -5'
16635 3' -54.5 NC_004156.1 + 58623 0.71 0.827407
Target:  5'- aCGUAAAGCcGAuGCUGAAGCaGCaaaGCg -3'
miRNA:   3'- -GCAUUUCGcCUcCGACUUCGaCGg--CG- -5'
16635 3' -54.5 NC_004156.1 + 85642 0.74 0.647243
Target:  5'- aCGUAAAGCgGGAGGCuccuuUGAAGCgGuaGCg -3'
miRNA:   3'- -GCAUUUCG-CCUCCG-----ACUUCGaCggCG- -5'
16635 3' -54.5 NC_004156.1 + 149432 0.66 0.968716
Target:  5'- ------cCGGAGGUgugguagaguacgaUGGAGCUGCCGa -3'
miRNA:   3'- gcauuucGCCUCCG--------------ACUUCGACGGCg -5'
16635 3' -54.5 NC_004156.1 + 196340 0.66 0.975048
Target:  5'- --aGAGGCGGAGuCUGA-GCcgGCCGa -3'
miRNA:   3'- gcaUUUCGCCUCcGACUuCGa-CGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.