Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16637 | 5' | -49.7 | NC_004156.1 | + | 102843 | 0.66 | 0.999663 |
Target: 5'- gCUGagGAGCGCAAA-CCCGAGgagUCGg -3' miRNA: 3'- -GGCaaCUUGCGUUUcGGGUUCag-AGC- -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 25480 | 0.66 | 0.99958 |
Target: 5'- aCGUUaAGCGac-AGCCCGAGUCaUCu -3' miRNA: 3'- gGCAAcUUGCguuUCGGGUUCAG-AGc -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 37039 | 0.66 | 0.999571 |
Target: 5'- gUCGUUucucuugaauaugGAACGUAAacGGCUCAAGgagCUCGu -3' miRNA: 3'- -GGCAA-------------CUUGCGUU--UCGGGUUCa--GAGC- -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 33239 | 0.67 | 0.999358 |
Target: 5'- --uUUGAAU-CAAAGCCCGaauccuugaccgAGUCUCGg -3' miRNA: 3'- ggcAACUUGcGUUUCGGGU------------UCAGAGC- -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 194983 | 0.67 | 0.999213 |
Target: 5'- aUCGUgcaaaGCAAAGCUCAAGUCa-- -3' miRNA: 3'- -GGCAacuugCGUUUCGGGUUCAGagc -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 145900 | 0.67 | 0.999213 |
Target: 5'- aCCG-UGAACGCAccaAGGgUCAGGUCa-- -3' miRNA: 3'- -GGCaACUUGCGU---UUCgGGUUCAGagc -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 34988 | 0.67 | 0.999213 |
Target: 5'- aUCGUUGGccuugguUGCcGAGUCCAAGUCUa- -3' miRNA: 3'- -GGCAACUu------GCGuUUCGGGUUCAGAgc -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 2068 | 0.7 | 0.989293 |
Target: 5'- gCGUUGGACGCGAucgauucuacaCCCGAGUCa-- -3' miRNA: 3'- gGCAACUUGCGUUuc---------GGGUUCAGagc -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 149219 | 0.7 | 0.986612 |
Target: 5'- gCCGcuaGAGguUGCAgcGCCCGAGUUUCGa -3' miRNA: 3'- -GGCaa-CUU--GCGUuuCGGGUUCAGAGC- -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 158760 | 0.71 | 0.981035 |
Target: 5'- uCCGgcGGugGCA---CCCGAGUCUCc -3' miRNA: 3'- -GGCaaCUugCGUuucGGGUUCAGAGc -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 109158 | 0.74 | 0.914054 |
Target: 5'- aCUGUUGAccgAUGCcggugccgagaguAGAGCCCcAGUCUCGg -3' miRNA: 3'- -GGCAACU---UGCG-------------UUUCGGGuUCAGAGC- -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 37858 | 0.76 | 0.860003 |
Target: 5'- uUGUUGuGCGCAAAcGCCUcacuaGAGUCUCGg -3' miRNA: 3'- gGCAACuUGCGUUU-CGGG-----UUCAGAGC- -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 208683 | 0.78 | 0.754398 |
Target: 5'- aCGUUGAGCGU--GGCCUcuGUCUCGu -3' miRNA: 3'- gGCAACUUGCGuuUCGGGuuCAGAGC- -5' |
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16637 | 5' | -49.7 | NC_004156.1 | + | 67580 | 1.12 | 0.012868 |
Target: 5'- aCCGUUGAACGCAAAGCCCAAGUCUCGu -3' miRNA: 3'- -GGCAACUUGCGUUUCGGGUUCAGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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