miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16649 5' -48.6 NC_004156.1 + 123022 1.11 0.015261
Target:  5'- uACCAAUCCCAACACUAGUACUGGAACa -3'
miRNA:   3'- -UGGUUAGGGUUGUGAUCAUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 175678 0.8 0.696967
Target:  5'- gAUCGAUCCgGACAaacccaUGGUACUGGAGCc -3'
miRNA:   3'- -UGGUUAGGgUUGUg-----AUCAUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 104443 0.79 0.76795
Target:  5'- aACCGAUCCCGGCACcaguguUGGUGgUGGAuGCa -3'
miRNA:   3'- -UGGUUAGGGUUGUG------AUCAUgACCU-UG- -5'
16649 5' -48.6 NC_004156.1 + 67961 0.74 0.931145
Target:  5'- uACCAGUgCCAACACUAauaccGUAUUGGuACu -3'
miRNA:   3'- -UGGUUAgGGUUGUGAU-----CAUGACCuUG- -5'
16649 5' -48.6 NC_004156.1 + 199395 0.73 0.950348
Target:  5'- uGCCGacauugGUCUCGACACUAGU-CUGGcAGCc -3'
miRNA:   3'- -UGGU------UAGGGUUGUGAUCAuGACC-UUG- -5'
16649 5' -48.6 NC_004156.1 + 104188 0.73 0.958451
Target:  5'- cACCA---CCAACACUGGUGCcGGGAUc -3'
miRNA:   3'- -UGGUuagGGUUGUGAUCAUGaCCUUG- -5'
16649 5' -48.6 NC_004156.1 + 54838 0.73 0.965597
Target:  5'- cACCAcUCUCAAUGCaGGUACUGGGcuuGCa -3'
miRNA:   3'- -UGGUuAGGGUUGUGaUCAUGACCU---UG- -5'
16649 5' -48.6 NC_004156.1 + 180313 0.72 0.979594
Target:  5'- cACCAGUUgCAACuauCUAGaAUUGGAGCu -3'
miRNA:   3'- -UGGUUAGgGUUGu--GAUCaUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 142585 0.7 0.990213
Target:  5'- uCCaAAUCCCGACACUuGUACcuGAGCg -3'
miRNA:   3'- uGG-UUAGGGUUGUGAuCAUGacCUUG- -5'
16649 5' -48.6 NC_004156.1 + 211132 0.7 0.992562
Target:  5'- gACCGAUgCCAAUACUAGU---GGAAUc -3'
miRNA:   3'- -UGGUUAgGGUUGUGAUCAugaCCUUG- -5'
16649 5' -48.6 NC_004156.1 + 110441 0.7 0.992562
Target:  5'- cACCGAUCCCuguauuCACUugaauccguuuGUACUGGAc- -3'
miRNA:   3'- -UGGUUAGGGuu----GUGAu----------CAUGACCUug -5'
16649 5' -48.6 NC_004156.1 + 186197 0.7 0.993555
Target:  5'- uGCUGG-CaCUGGCACUGGUACUGGAcuaGCa -3'
miRNA:   3'- -UGGUUaG-GGUUGUGAUCAUGACCU---UG- -5'
16649 5' -48.6 NC_004156.1 + 153990 0.69 0.994439
Target:  5'- uGCCAGUCCCAGCuCUAGUA---GAAa -3'
miRNA:   3'- -UGGUUAGGGUUGuGAUCAUgacCUUg -5'
16649 5' -48.6 NC_004156.1 + 174665 0.69 0.994439
Target:  5'- gGCCAAUgCCAGCAa-GGUgACUGGAc- -3'
miRNA:   3'- -UGGUUAgGGUUGUgaUCA-UGACCUug -5'
16649 5' -48.6 NC_004156.1 + 137686 0.69 0.995914
Target:  5'- uCgAGUCUCGACAUUGGaGCUGGAc- -3'
miRNA:   3'- uGgUUAGGGUUGUGAUCaUGACCUug -5'
16649 5' -48.6 NC_004156.1 + 159390 0.69 0.995914
Target:  5'- -gCAAcUCCAACACUAGaaaUACUaGGAGCa -3'
miRNA:   3'- ugGUUaGGGUUGUGAUC---AUGA-CCUUG- -5'
16649 5' -48.6 NC_004156.1 + 188304 0.69 0.995914
Target:  5'- uGCgGAUCCCAACAgUGGUGCc--GACg -3'
miRNA:   3'- -UGgUUAGGGUUGUgAUCAUGaccUUG- -5'
16649 5' -48.6 NC_004156.1 + 164395 0.69 0.995914
Target:  5'- uCCAGUgCCAGCACUGGUACc----- -3'
miRNA:   3'- uGGUUAgGGUUGUGAUCAUGaccuug -5'
16649 5' -48.6 NC_004156.1 + 127562 0.69 0.996521
Target:  5'- uACCc--UCCGACACcgAGUACgGGAACg -3'
miRNA:   3'- -UGGuuaGGGUUGUGa-UCAUGaCCUUG- -5'
16649 5' -48.6 NC_004156.1 + 45643 0.69 0.996521
Target:  5'- gACUggUauuuaCAGCACUGGUACUGGuauuGGCa -3'
miRNA:   3'- -UGGuuAgg---GUUGUGAUCAUGACC----UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.