Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16649 | 5' | -48.6 | NC_004156.1 | + | 5802 | 0.67 | 0.999018 |
Target: 5'- uUCAAUCCUAACACUAauacauuuGUACUGu-ACa -3' miRNA: 3'- uGGUUAGGGUUGUGAU--------CAUGACcuUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 18501 | 0.69 | 0.996521 |
Target: 5'- uUCGAUCCCGACACUcGUACcUGcuACa -3' miRNA: 3'- uGGUUAGGGUUGUGAuCAUG-ACcuUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 25964 | 0.66 | 0.999874 |
Target: 5'- cACCAGUCUCGGCuuuuuaUAGUGC-GGAu- -3' miRNA: 3'- -UGGUUAGGGUUGug----AUCAUGaCCUug -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 45643 | 0.69 | 0.996521 |
Target: 5'- gACUggUauuuaCAGCACUGGUACUGGuauuGGCa -3' miRNA: 3'- -UGGuuAgg---GUUGUGAUCAUGACC----UUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 46769 | 0.66 | 0.999837 |
Target: 5'- gGCUuGUCCgGGuuauugaauuCACUGGUAUUGGAAUu -3' miRNA: 3'- -UGGuUAGGgUU----------GUGAUCAUGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 49668 | 0.66 | 0.999665 |
Target: 5'- uACCAAUCUUAccACACUu-UACUGGAc- -3' miRNA: 3'- -UGGUUAGGGU--UGUGAucAUGACCUug -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 54838 | 0.73 | 0.965597 |
Target: 5'- cACCAcUCUCAAUGCaGGUACUGGGcuuGCa -3' miRNA: 3'- -UGGUuAGGGUUGUGaUCAUGACCU---UG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 59084 | 0.66 | 0.999874 |
Target: 5'- gGCUg--CUggUAGCACUGGUACUGGuAGCu -3' miRNA: 3'- -UGGuuaGG--GUUGUGAUCAUGACC-UUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 67961 | 0.74 | 0.931145 |
Target: 5'- uACCAGUgCCAACACUAauaccGUAUUGGuACu -3' miRNA: 3'- -UGGUUAgGGUUGUGAU-----CAUGACCuUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 80489 | 0.68 | 0.997913 |
Target: 5'- uGCCAua-CCGACGCUGGcacucaaucggcUACUGGuGCg -3' miRNA: 3'- -UGGUuagGGUUGUGAUC------------AUGACCuUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 88732 | 0.66 | 0.999874 |
Target: 5'- uACCGAUUCCAAUACUaacagugccaagAGUACU--AACa -3' miRNA: 3'- -UGGUUAGGGUUGUGA------------UCAUGAccUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 96524 | 0.68 | 0.998805 |
Target: 5'- cCCGAUCCCAGC-CUAGaguaUACUGu-ACa -3' miRNA: 3'- uGGUUAGGGUUGuGAUC----AUGACcuUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 104188 | 0.73 | 0.958451 |
Target: 5'- cACCA---CCAACACUGGUGCcGGGAUc -3' miRNA: 3'- -UGGUuagGGUUGUGAUCAUGaCCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 104443 | 0.79 | 0.76795 |
Target: 5'- aACCGAUCCCGGCACcaguguUGGUGgUGGAuGCa -3' miRNA: 3'- -UGGUUAGGGUUGUG------AUCAUgACCU-UG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 110441 | 0.7 | 0.992562 |
Target: 5'- cACCGAUCCCuguauuCACUugaauccguuuGUACUGGAc- -3' miRNA: 3'- -UGGUUAGGGuu----GUGAu----------CAUGACCUug -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 111007 | 0.66 | 0.999665 |
Target: 5'- gAUUGAUUCCAGCAa-AGUGUUGGAACg -3' miRNA: 3'- -UGGUUAGGGUUGUgaUCAUGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 111269 | 0.69 | 0.996521 |
Target: 5'- gACCcucgcGUUCCAACACUu-UGCUGGAAUc -3' miRNA: 3'- -UGGu----UAGGGUUGUGAucAUGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 123022 | 1.11 | 0.015261 |
Target: 5'- uACCAAUCCCAACACUAGUACUGGAACa -3' miRNA: 3'- -UGGUUAGGGUUGUGAUCAUGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 124834 | 0.67 | 0.999018 |
Target: 5'- uAUCAAUCaaAACACUGGUgaACUGGuuccGCa -3' miRNA: 3'- -UGGUUAGggUUGUGAUCA--UGACCu---UG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 127562 | 0.69 | 0.996521 |
Target: 5'- uACCc--UCCGACACcgAGUACgGGAACg -3' miRNA: 3'- -UGGuuaGGGUUGUGa-UCAUGaCCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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