Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16649 | 5' | -48.6 | NC_004156.1 | + | 226380 | 0.68 | 0.997913 |
Target: 5'- uGCCAAUgCUGGCACUGGUuCaGGAGg -3' miRNA: 3'- -UGGUUAgGGUUGUGAUCAuGaCCUUg -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 218267 | 0.66 | 0.999874 |
Target: 5'- aGCCGGUCCauuucGCGCUGaucGUACUcGGACg -3' miRNA: 3'- -UGGUUAGGgu---UGUGAU---CAUGAcCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 214140 | 0.67 | 0.999198 |
Target: 5'- gUCGAUUCgAcACACUGGacggcUACUGGAGCa -3' miRNA: 3'- uGGUUAGGgU-UGUGAUC-----AUGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 213887 | 0.68 | 0.998805 |
Target: 5'- ---cGUCUCGACGCcagAGUACUGGuGCg -3' miRNA: 3'- ugguUAGGGUUGUGa--UCAUGACCuUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 211132 | 0.7 | 0.992562 |
Target: 5'- gACCGAUgCCAAUACUAGU---GGAAUc -3' miRNA: 3'- -UGGUUAgGGUUGUGAUCAugaCCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 209167 | 0.66 | 0.999665 |
Target: 5'- cACCGAUaCCGACuCUGGUuCUGGuACu -3' miRNA: 3'- -UGGUUAgGGUUGuGAUCAuGACCuUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 207649 | 0.66 | 0.999874 |
Target: 5'- uACCA---CCAGUACUAGUACUGGcuCu -3' miRNA: 3'- -UGGUuagGGUUGUGAUCAUGACCuuG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 206050 | 0.67 | 0.999579 |
Target: 5'- cACCugcAUCggagaguaCCGGCACUGGUaccggugcugucACUGGAGCc -3' miRNA: 3'- -UGGu--UAG--------GGUUGUGAUCA------------UGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 199395 | 0.73 | 0.950348 |
Target: 5'- uGCCGacauugGUCUCGACACUAGU-CUGGcAGCc -3' miRNA: 3'- -UGGU------UAGGGUUGUGAUCAuGACC-UUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 188304 | 0.69 | 0.995914 |
Target: 5'- uGCgGAUCCCAACAgUGGUGCc--GACg -3' miRNA: 3'- -UGgUUAGGGUUGUgAUCAUGaccUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 186197 | 0.7 | 0.993555 |
Target: 5'- uGCUGG-CaCUGGCACUGGUACUGGAcuaGCa -3' miRNA: 3'- -UGGUUaG-GGUUGUGAUCAUGACCU---UG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 183608 | 0.66 | 0.999853 |
Target: 5'- uGCCAA-CCUaugguaccugggagcGACGCUGGccgcACUGGGACc -3' miRNA: 3'- -UGGUUaGGG---------------UUGUGAUCa---UGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 180313 | 0.72 | 0.979594 |
Target: 5'- cACCAGUUgCAACuauCUAGaAUUGGAGCu -3' miRNA: 3'- -UGGUUAGgGUUGu--GAUCaUGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 177184 | 0.67 | 0.999018 |
Target: 5'- cACaCAAUgCCAucgaGCGuCUGGUGCUGGAc- -3' miRNA: 3'- -UG-GUUAgGGU----UGU-GAUCAUGACCUug -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 175678 | 0.8 | 0.696967 |
Target: 5'- gAUCGAUCCgGACAaacccaUGGUACUGGAGCc -3' miRNA: 3'- -UGGUUAGGgUUGUg-----AUCAUGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 174665 | 0.69 | 0.994439 |
Target: 5'- gGCCAAUgCCAGCAa-GGUgACUGGAc- -3' miRNA: 3'- -UGGUUAgGGUUGUgaUCA-UGACCUug -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 164395 | 0.69 | 0.995914 |
Target: 5'- uCCAGUgCCAGCACUGGUACc----- -3' miRNA: 3'- uGGUUAgGGUUGUGAUCAUGaccuug -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 159390 | 0.69 | 0.995914 |
Target: 5'- -gCAAcUCCAACACUAGaaaUACUaGGAGCa -3' miRNA: 3'- ugGUUaGGGUUGUGAUC---AUGA-CCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 156209 | 0.66 | 0.999874 |
Target: 5'- uACCGGUCaucACACagAGUgccaACUGGAGCa -3' miRNA: 3'- -UGGUUAGgguUGUGa-UCA----UGACCUUG- -5' |
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16649 | 5' | -48.6 | NC_004156.1 | + | 153990 | 0.69 | 0.994439 |
Target: 5'- uGCCAGUCCCAGCuCUAGUA---GAAa -3' miRNA: 3'- -UGGUUAGGGUUGuGAUCAUgacCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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