miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 107817 0.67 0.948978
Target:  5'- aCaCUACCAcCACCAUCAACACUAa- -3'
miRNA:   3'- aGcGGUGGUuGUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 76845 0.68 0.944694
Target:  5'- -gGCUACCuagagGACACCACCuAUcCCACg -3'
miRNA:   3'- agCGGUGG-----UUGUGGUGGuUGuGGUGa -5'
16667 5' -54.5 NC_004156.1 + 179696 0.68 0.944694
Target:  5'- aUCGUacUACgGACuugcCCACCGACACCAgUa -3'
miRNA:   3'- -AGCG--GUGgUUGu---GGUGGUUGUGGUgA- -5'
16667 5' -54.5 NC_004156.1 + 43398 0.68 0.944694
Target:  5'- gUGCUACCAAaaaaACUagagcgaugACUAGCACCGCUc -3'
miRNA:   3'- aGCGGUGGUUg---UGG---------UGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 71555 0.68 0.94018
Target:  5'- cUGCCACCucCAUUGCCAuuGCCAUUa -3'
miRNA:   3'- aGCGGUGGuuGUGGUGGUugUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 106734 0.68 0.94018
Target:  5'- -gGCCAUCAGCAaggaGCCGGCugCAUc -3'
miRNA:   3'- agCGGUGGUUGUgg--UGGUUGugGUGa -5'
16667 5' -54.5 NC_004156.1 + 19024 0.68 0.939716
Target:  5'- gUCGCUgcucaacgaacugACCAGCgcagauuuuGCCGCCAGCGuuGCUg -3'
miRNA:   3'- -AGCGG-------------UGGUUG---------UGGUGGUUGUggUGA- -5'
16667 5' -54.5 NC_004156.1 + 126564 0.68 0.937361
Target:  5'- aCaCUACCAaaaacaacaacaaagACAaCACCAACACCACUa -3'
miRNA:   3'- aGcGGUGGU---------------UGUgGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 201965 0.68 0.935435
Target:  5'- aCGUCgugCAAgACCACCGACACCGg- -3'
miRNA:   3'- aGCGGug-GUUgUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 25346 0.68 0.932477
Target:  5'- gUGCCACCAagaguuuaagucucgACACUgcauuaccguuGCCGAUACUACa -3'
miRNA:   3'- aGCGGUGGU---------------UGUGG-----------UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 223996 0.68 0.930458
Target:  5'- aUGCUAUCAAUACCAaCAACACUAa- -3'
miRNA:   3'- aGCGGUGGUUGUGGUgGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 112805 0.68 0.930458
Target:  5'- cUCGgUACUggUGCCGCCAaacACAUCGCa -3'
miRNA:   3'- -AGCgGUGGuuGUGGUGGU---UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 20860 0.68 0.930458
Target:  5'- cCGCCugCAaguGCAcCCACCAGCAUaaGCa -3'
miRNA:   3'- aGCGGugGU---UGU-GGUGGUUGUGg-UGa -5'
16667 5' -54.5 NC_004156.1 + 36591 0.68 0.930458
Target:  5'- aUCGCUACCGGCACauggaaacugGCCAACGgcggUCACa -3'
miRNA:   3'- -AGCGGUGGUUGUGg---------UGGUUGU----GGUGa -5'
16667 5' -54.5 NC_004156.1 + 115506 0.68 0.930458
Target:  5'- -aGCCG-CAACACCaacACCAACACUAa- -3'
miRNA:   3'- agCGGUgGUUGUGG---UGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 35724 0.68 0.927361
Target:  5'- aUCGCCACCGAacgauuguacugauuCACCGaguCCAACACguCc -3'
miRNA:   3'- -AGCGGUGGUU---------------GUGGU---GGUUGUGguGa -5'
16667 5' -54.5 NC_004156.1 + 199995 0.68 0.925249
Target:  5'- -aGCaaCACCAACACCAaCAACACUAg- -3'
miRNA:   3'- agCG--GUGGUUGUGGUgGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 36290 0.68 0.925249
Target:  5'- aUUGCCGCCAcCACCGCau---CCGCUc -3'
miRNA:   3'- -AGCGGUGGUuGUGGUGguuguGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 130945 0.68 0.925249
Target:  5'- cCGUCACCGuuCACCGCCAAguCUggACUg -3'
miRNA:   3'- aGCGGUGGUu-GUGGUGGUUguGG--UGA- -5'
16667 5' -54.5 NC_004156.1 + 64858 0.68 0.919805
Target:  5'- cUGCUACUAcUACCACUAcCACUACUa -3'
miRNA:   3'- aGCGGUGGUuGUGGUGGUuGUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.