miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 150064 0.66 0.96708
Target:  5'- --aCCACCAACacugucucccaaACCACCucucGCAUCGCUa -3'
miRNA:   3'- agcGGUGGUUG------------UGGUGGu---UGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 37224 0.66 0.966458
Target:  5'- -gGCCACCAACugaggcuuccaCACUAGUACCGCa -3'
miRNA:   3'- agCGGUGGUUGug---------GUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 46490 0.67 0.96519
Target:  5'- --aCUACCAACACaccauccagcuccaaCACUGGCACCACa -3'
miRNA:   3'- agcGGUGGUUGUG---------------GUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 39889 0.67 0.964217
Target:  5'- aCGCCuccuaauacgguuaCAACACCuACCAcgaguGCACCACc -3'
miRNA:   3'- aGCGGug------------GUUGUGG-UGGU-----UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 39442 0.67 0.963889
Target:  5'- aCGa-GgCGACACCACCAaagaagGCACCGCc -3'
miRNA:   3'- aGCggUgGUUGUGGUGGU------UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 68485 0.67 0.963889
Target:  5'- ----uGCCAGCAgUACCAGCACUGCa -3'
miRNA:   3'- agcggUGGUUGUgGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 132670 0.67 0.963558
Target:  5'- aCGaucaCACCAguguacaugcuGCACUauguacaGCCGACGCCACa -3'
miRNA:   3'- aGCg---GUGGU-----------UGUGG-------UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 3525 0.67 0.962891
Target:  5'- cCGCCACCGGCuuCACUAgagauuuuaugaauACGCgGCa -3'
miRNA:   3'- aGCGGUGGUUGugGUGGU--------------UGUGgUGa -5'
16667 5' -54.5 NC_004156.1 + 148864 0.67 0.960488
Target:  5'- uUUGCUGCCAACGCUugGCCAAUuugagACuCACUc -3'
miRNA:   3'- -AGCGGUGGUUGUGG--UGGUUG-----UG-GUGA- -5'
16667 5' -54.5 NC_004156.1 + 25888 0.67 0.956872
Target:  5'- -aGCCACUcaccuaguaccaGACGCUGCCuACACCAgUg -3'
miRNA:   3'- agCGGUGG------------UUGUGGUGGuUGUGGUgA- -5'
16667 5' -54.5 NC_004156.1 + 86401 0.67 0.956872
Target:  5'- -gGCCucACCAGCaagaGCCGCCGagaGCugCACg -3'
miRNA:   3'- agCGG--UGGUUG----UGGUGGU---UGugGUGa -5'
16667 5' -54.5 NC_004156.1 + 1798 0.67 0.956872
Target:  5'- cCGCUACUAGCAgUgguagcaguugcGCUAGCGCUACUa -3'
miRNA:   3'- aGCGGUGGUUGUgG------------UGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 153469 0.67 0.953037
Target:  5'- gUGCUACgAACGCuugucguuugaCACCAACACCGa- -3'
miRNA:   3'- aGCGGUGgUUGUG-----------GUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 85397 0.67 0.953037
Target:  5'- aUCGCgaaauCGCCAuCGuuGCCGGCACCAUc -3'
miRNA:   3'- -AGCG-----GUGGUuGUggUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 190594 0.67 0.953037
Target:  5'- cUCGUCAgCGuACAUCAUCGugACUACUa -3'
miRNA:   3'- -AGCGGUgGU-UGUGGUGGUugUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 46902 0.67 0.953037
Target:  5'- gUCGCCguuCAACACCACCuACAauaCAUg -3'
miRNA:   3'- -AGCGGug-GUUGUGGUGGuUGUg--GUGa -5'
16667 5' -54.5 NC_004156.1 + 150736 0.67 0.951843
Target:  5'- aCGCCcugACCGAUGugcagcacaaguguCCGCCGAcCACCACg -3'
miRNA:   3'- aGCGG---UGGUUGU--------------GGUGGUU-GUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 40010 0.67 0.948978
Target:  5'- aUCGCCcagACagaAACGCUACCuGACGCCAg- -3'
miRNA:   3'- -AGCGG---UGg--UUGUGGUGG-UUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 107817 0.67 0.948978
Target:  5'- aCaCUACCAcCACCAUCAACACUAa- -3'
miRNA:   3'- aGcGGUGGUuGUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 40860 0.67 0.948978
Target:  5'- cCuaUACCuACACCACCuACACUACc -3'
miRNA:   3'- aGcgGUGGuUGUGGUGGuUGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.