miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 39889 0.67 0.964217
Target:  5'- aCGCCuccuaauacgguuaCAACACCuACCAcgaguGCACCACc -3'
miRNA:   3'- aGCGGug------------GUUGUGG-UGGU-----UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 39941 0.7 0.85297
Target:  5'- cUCGuCCAagcCCAGUACCAgCAACACUACUa -3'
miRNA:   3'- -AGC-GGU---GGUUGUGGUgGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 40010 0.67 0.948978
Target:  5'- aUCGCCcagACagaAACGCUACCuGACGCCAg- -3'
miRNA:   3'- -AGCGG---UGg--UUGUGGUGG-UUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 40239 0.66 0.980086
Target:  5'- gCGUCACCAAaGCCaaaACCAGaGCCAUg -3'
miRNA:   3'- aGCGGUGGUUgUGG---UGGUUgUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 40781 0.66 0.972853
Target:  5'- -aGCCagaGCCAGCGCCcaaGCCuACACC-Ca -3'
miRNA:   3'- agCGG---UGGUUGUGG---UGGuUGUGGuGa -5'
16667 5' -54.5 NC_004156.1 + 40860 0.67 0.948978
Target:  5'- cCuaUACCuACACCACCuACACUACc -3'
miRNA:   3'- aGcgGUGGuUGUGGUGGuUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 41018 0.76 0.578618
Target:  5'- cCGCCACCGAaGCCACCAccuccgGCACCu-- -3'
miRNA:   3'- aGCGGUGGUUgUGGUGGU------UGUGGuga -5'
16667 5' -54.5 NC_004156.1 + 41090 0.71 0.81195
Target:  5'- cCGCCGCCugauCCACCGAaACCGCc -3'
miRNA:   3'- aGCGGUGGuuguGGUGGUUgUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 41114 0.66 0.980086
Target:  5'- cCuCCACCGAaaccuCCACUuGCACCACc -3'
miRNA:   3'- aGcGGUGGUUgu---GGUGGuUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 43398 0.68 0.944694
Target:  5'- gUGCUACCAAaaaaACUagagcgaugACUAGCACCGCUc -3'
miRNA:   3'- aGCGGUGGUUg---UGG---------UGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 46385 0.74 0.689372
Target:  5'- aUGCUACUAcUACCaacACCAACACCACa -3'
miRNA:   3'- aGCGGUGGUuGUGG---UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 46490 0.67 0.96519
Target:  5'- --aCUACCAACACaccauccagcuccaaCACUGGCACCACa -3'
miRNA:   3'- agcGGUGGUUGUG---------------GUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 46902 0.67 0.953037
Target:  5'- gUCGCCguuCAACACCACCuACAauaCAUg -3'
miRNA:   3'- -AGCGGug-GUUGUGGUGGuUGUg--GUGa -5'
16667 5' -54.5 NC_004156.1 + 49759 0.71 0.828889
Target:  5'- gUCaCUACCAAuguCACUACCAAUAUCACUg -3'
miRNA:   3'- -AGcGGUGGUU---GUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 53326 0.75 0.628971
Target:  5'- cCGUCaauGCCAGCAUCaaaACCAGCACCACc -3'
miRNA:   3'- aGCGG---UGGUUGUGG---UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 54054 0.72 0.77623
Target:  5'- aUCGauCCAUCGGcCACCACCAGguCCACUu -3'
miRNA:   3'- -AGC--GGUGGUU-GUGGUGGUUguGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 54818 1.08 0.007031
Target:  5'- uUCGCCACCAACACCACCAACACCACUc -3'
miRNA:   3'- -AGCGGUGGUUGUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 54863 0.88 0.13148
Target:  5'- cUGCUACCGAUGCCGCCAAUGCCACUa -3'
miRNA:   3'- aGCGGUGGUUGUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 63289 0.73 0.72882
Target:  5'- aCGCCACCAAgAUUAa-GACACCACg -3'
miRNA:   3'- aGCGGUGGUUgUGGUggUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 64858 0.68 0.919805
Target:  5'- cUGCUACUAcUACCACUAcCACUACUa -3'
miRNA:   3'- aGCGGUGGUuGUGGUGGUuGUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.