miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 443 0.75 0.618867
Target:  5'- aCGCCACUAGCAaacaaCACCAGCAaaCACUa -3'
miRNA:   3'- aGCGGUGGUUGUg----GUGGUUGUg-GUGA- -5'
16667 5' -54.5 NC_004156.1 + 1798 0.67 0.956872
Target:  5'- cCGCUACUAGCAgUgguagcaguugcGCUAGCGCUACUa -3'
miRNA:   3'- aGCGGUGGUUGUgG------------UGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 2495 0.66 0.970066
Target:  5'- gUCGCUACUAcCACUAUCcucGCuACCACUg -3'
miRNA:   3'- -AGCGGUGGUuGUGGUGGu--UG-UGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 3525 0.67 0.962891
Target:  5'- cCGCCACCGGCuuCACUAgagauuuuaugaauACGCgGCa -3'
miRNA:   3'- aGCGGUGGUUGugGUGGU--------------UGUGgUGa -5'
16667 5' -54.5 NC_004156.1 + 4775 0.77 0.490788
Target:  5'- aUCGCCACCAGugguauCACCACCAGucaACCAUc -3'
miRNA:   3'- -AGCGGUGGUU------GUGGUGGUUg--UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 7217 0.7 0.86806
Target:  5'- ---aCACCAACAaCACCAACaACCACa -3'
miRNA:   3'- agcgGUGGUUGUgGUGGUUG-UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 19024 0.68 0.939716
Target:  5'- gUCGCUgcucaacgaacugACCAGCgcagauuuuGCCGCCAGCGuuGCUg -3'
miRNA:   3'- -AGCGG-------------UGGUUG---------UGGUGGUUGUggUGA- -5'
16667 5' -54.5 NC_004156.1 + 19163 0.69 0.908222
Target:  5'- gUCGCCACguugGCCAUCGACACCuCg -3'
miRNA:   3'- -AGCGGUGguugUGGUGGUUGUGGuGa -5'
16667 5' -54.5 NC_004156.1 + 19394 0.69 0.91413
Target:  5'- aCGCCcgACUAcCugCACCAGCugUACg -3'
miRNA:   3'- aGCGG--UGGUuGugGUGGUUGugGUGa -5'
16667 5' -54.5 NC_004156.1 + 20860 0.68 0.930458
Target:  5'- cCGCCugCAaguGCAcCCACCAGCAUaaGCa -3'
miRNA:   3'- aGCGGugGU---UGU-GGUGGUUGUGg-UGa -5'
16667 5' -54.5 NC_004156.1 + 22359 0.69 0.889133
Target:  5'- -aGCCACCcuagGGCACCugCAcaAUugCACUc -3'
miRNA:   3'- agCGGUGG----UUGUGGugGU--UGugGUGA- -5'
16667 5' -54.5 NC_004156.1 + 25346 0.68 0.932477
Target:  5'- gUGCCACCAagaguuuaagucucgACACUgcauuaccguuGCCGAUACUACa -3'
miRNA:   3'- aGCGGUGGU---------------UGUGG-----------UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 25888 0.67 0.956872
Target:  5'- -aGCCACUcaccuaguaccaGACGCUGCCuACACCAgUg -3'
miRNA:   3'- agCGGUGG------------UUGUGGUGGuUGUGGUgA- -5'
16667 5' -54.5 NC_004156.1 + 35724 0.68 0.927361
Target:  5'- aUCGCCACCGAacgauuguacugauuCACCGaguCCAACACguCc -3'
miRNA:   3'- -AGCGGUGGUU---------------GUGGU---GGUUGUGguGa -5'
16667 5' -54.5 NC_004156.1 + 36290 0.68 0.925249
Target:  5'- aUUGCCGCCAcCACCGCau---CCGCUc -3'
miRNA:   3'- -AGCGGUGGUuGUGGUGguuguGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 36572 0.7 0.882324
Target:  5'- uUUGCUaaugACCAACGgUACCG-CACCGCUg -3'
miRNA:   3'- -AGCGG----UGGUUGUgGUGGUuGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 36591 0.68 0.930458
Target:  5'- aUCGCUACCGGCACauggaaacugGCCAACGgcggUCACa -3'
miRNA:   3'- -AGCGGUGGUUGUGg---------UGGUUGU----GGUGa -5'
16667 5' -54.5 NC_004156.1 + 37224 0.66 0.966458
Target:  5'- -gGCCACCAACugaggcuuccaCACUAGUACCGCa -3'
miRNA:   3'- agCGGUGGUUGug---------GUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 39442 0.67 0.963889
Target:  5'- aCGa-GgCGACACCACCAaagaagGCACCGCc -3'
miRNA:   3'- aGCggUgGUUGUGGUGGU------UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 39549 0.71 0.81195
Target:  5'- gCGCCAgCAACACUagcaguGCCAGCGaCACUa -3'
miRNA:   3'- aGCGGUgGUUGUGG------UGGUUGUgGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.