miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 228031 0.72 0.766964
Target:  5'- cCaCCACaCAACGCCA-CAACGCCACa -3'
miRNA:   3'- aGcGGUG-GUUGUGGUgGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 226088 0.73 0.696345
Target:  5'- uUCGCauccuuagagcaauCACUAGaACCACCGACACCACc -3'
miRNA:   3'- -AGCG--------------GUGGUUgUGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 225185 0.67 0.948978
Target:  5'- -aGCCAUCAGacaagACUACUAAUACUACUa -3'
miRNA:   3'- agCGGUGGUUg----UGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 223996 0.68 0.930458
Target:  5'- aUGCUAUCAAUACCAaCAACACUAa- -3'
miRNA:   3'- aGCGGUGGUUGUGGUgGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 222604 0.7 0.882324
Target:  5'- --aCUACCAACAUuauUACCAACACCAUc -3'
miRNA:   3'- agcGGUGGUUGUG---GUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 221502 0.66 0.970066
Target:  5'- -aGCUuuuCCAACAgacuacCCACCcugaugcuGACACCACUg -3'
miRNA:   3'- agCGGu--GGUUGU------GGUGG--------UUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 215212 0.74 0.659267
Target:  5'- cCGUgCACCAACACCACgAcCACCAUa -3'
miRNA:   3'- aGCG-GUGGUUGUGGUGgUuGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 213691 0.66 0.980086
Target:  5'- cUCGCCGCUcuuguACAaCACCGACucuUCGCUg -3'
miRNA:   3'- -AGCGGUGGu----UGUgGUGGUUGu--GGUGA- -5'
16667 5' -54.5 NC_004156.1 + 201965 0.68 0.935435
Target:  5'- aCGUCgugCAAgACCACCGACACCGg- -3'
miRNA:   3'- aGCGGug-GUUgUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 199995 0.68 0.925249
Target:  5'- -aGCaaCACCAACACCAaCAACACUAg- -3'
miRNA:   3'- agCG--GUGGUUGUGGUgGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 193175 0.74 0.669335
Target:  5'- gCGCUGCC---GCCACCAGCuACCGCUg -3'
miRNA:   3'- aGCGGUGGuugUGGUGGUUG-UGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 190594 0.67 0.953037
Target:  5'- cUCGUCAgCGuACAUCAUCGugACUACUa -3'
miRNA:   3'- -AGCGGUgGU-UGUGGUGGUugUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 183865 0.75 0.639078
Target:  5'- aUCGCUuCCAcagcACACUACCGAuCGCCACa -3'
miRNA:   3'- -AGCGGuGGU----UGUGGUGGUU-GUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 181989 0.73 0.699325
Target:  5'- -gGCaACCAGCACCACCGAUugUAUg -3'
miRNA:   3'- agCGgUGGUUGUGGUGGUUGugGUGa -5'
16667 5' -54.5 NC_004156.1 + 180682 0.66 0.977856
Target:  5'- gUGCaaguucaaCAACACCACCAACaaccgagugcuGCCGCa -3'
miRNA:   3'- aGCGgug-----GUUGUGGUGGUUG-----------UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 179696 0.68 0.944694
Target:  5'- aUCGUacUACgGACuugcCCACCGACACCAgUa -3'
miRNA:   3'- -AGCG--GUGgUUGu---GGUGGUUGUGGUgA- -5'
16667 5' -54.5 NC_004156.1 + 179105 0.71 0.828889
Target:  5'- -aGCCACCGACugCACUAGaauuggaaucauCACCAa- -3'
miRNA:   3'- agCGGUGGUUGugGUGGUU------------GUGGUga -5'
16667 5' -54.5 NC_004156.1 + 178562 0.66 0.970066
Target:  5'- -aGCCACCGGcCACUaugaACCGGCuACCAa- -3'
miRNA:   3'- agCGGUGGUU-GUGG----UGGUUG-UGGUga -5'
16667 5' -54.5 NC_004156.1 + 176073 0.72 0.77623
Target:  5'- cUGCCGCCu---CUGCCAGCACCAUUu -3'
miRNA:   3'- aGCGGUGGuuguGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 174463 0.69 0.889133
Target:  5'- uUCGCCACC-GCACCGucguCCAuuAUGCUGCUg -3'
miRNA:   3'- -AGCGGUGGuUGUGGU----GGU--UGUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.