miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 54818 1.08 0.007031
Target:  5'- uUCGCCACCAACACCACCAACACCACUc -3'
miRNA:   3'- -AGCGGUGGUUGUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 54863 0.88 0.13148
Target:  5'- cUGCUACCGAUGCCGCCAAUGCCACUa -3'
miRNA:   3'- aGCGGUGGUUGUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 149522 0.84 0.227403
Target:  5'- cUCGUaCACCGACACCACCuucuACACCACc -3'
miRNA:   3'- -AGCG-GUGGUUGUGGUGGu---UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 124598 0.82 0.281344
Target:  5'- gUCGCCGCUAcC-CCACCGACGCCGCc -3'
miRNA:   3'- -AGCGGUGGUuGuGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 149565 0.81 0.315468
Target:  5'- aCGCCACCuccuacaccGACGCCACCuucuACGCCACc -3'
miRNA:   3'- aGCGGUGG---------UUGUGGUGGu---UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 118640 0.8 0.344953
Target:  5'- aUGCUACUAAUACUACCAAUACUACUa -3'
miRNA:   3'- aGCGGUGGUUGUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 149493 0.8 0.384515
Target:  5'- cCGCCuccucguauACCGACGCCACCuucuACGCCACc -3'
miRNA:   3'- aGCGG---------UGGUUGUGGUGGu---UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 150002 0.8 0.384515
Target:  5'- aCGCCACCAACACUACCAcccaaACUACc -3'
miRNA:   3'- aGCGGUGGUUGUGGUGGUug---UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 115102 0.79 0.39278
Target:  5'- cCaCUACCAACACCACUAGCACUACc -3'
miRNA:   3'- aGcGGUGGUUGUGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 4775 0.77 0.490788
Target:  5'- aUCGCCACCAGugguauCACCACCAGucaACCAUc -3'
miRNA:   3'- -AGCGGUGGUU------GUGGUGGUUg--UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 102561 0.77 0.500272
Target:  5'- cCaCCACCGACACCAguaaCAACACCACc -3'
miRNA:   3'- aGcGGUGGUUGUGGUg---GUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 164700 0.77 0.500272
Target:  5'- gUCGCCuCCGGCACCGCgAGcCACCAUc -3'
miRNA:   3'- -AGCGGuGGUUGUGGUGgUU-GUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 107790 0.77 0.519475
Target:  5'- ---aCACCAAUACCaaaACCAACACCGCUa -3'
miRNA:   3'- agcgGUGGUUGUGG---UGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 136620 0.76 0.538961
Target:  5'- aUCGCaacagcaACCAACGCCACUugGGCACCAUc -3'
miRNA:   3'- -AGCGg------UGGUUGUGGUGG--UUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 41018 0.76 0.578618
Target:  5'- cCGCCACCGAaGCCACCAccuccgGCACCu-- -3'
miRNA:   3'- aGCGGUGGUUgUGGUGGU------UGUGGuga -5'
16667 5' -54.5 NC_004156.1 + 106715 0.75 0.598694
Target:  5'- aUCGCCACC-GCAaugCACCAGgcCACCACUc -3'
miRNA:   3'- -AGCGGUGGuUGUg--GUGGUU--GUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 85907 0.75 0.615837
Target:  5'- cUCGCUACCAGUACCcguugcgauucuuuACCAACACCuACUa -3'
miRNA:   3'- -AGCGGUGGUUGUGG--------------UGGUUGUGG-UGA- -5'
16667 5' -54.5 NC_004156.1 + 443 0.75 0.618867
Target:  5'- aCGCCACUAGCAaacaaCACCAGCAaaCACUa -3'
miRNA:   3'- aGCGGUGGUUGUg----GUGGUUGUg-GUGA- -5'
16667 5' -54.5 NC_004156.1 + 53326 0.75 0.628971
Target:  5'- cCGUCaauGCCAGCAUCaaaACCAGCACCACc -3'
miRNA:   3'- aGCGG---UGGUUGUGG---UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 183865 0.75 0.639078
Target:  5'- aUCGCUuCCAcagcACACUACCGAuCGCCACa -3'
miRNA:   3'- -AGCGGuGGU----UGUGGUGGUU-GUGGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.