miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 129964 0.71 0.828889
Target:  5'- gUGCUACCcgUACCGCCGgggaGCACCAgUa -3'
miRNA:   3'- aGCGGUGGuuGUGGUGGU----UGUGGUgA- -5'
16667 5' -54.5 NC_004156.1 + 215212 0.74 0.659267
Target:  5'- cCGUgCACCAACACCACgAcCACCAUa -3'
miRNA:   3'- aGCG-GUGGUUGUGGUGgUuGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 46385 0.74 0.689372
Target:  5'- aUGCUACUAcUACCaacACCAACACCACa -3'
miRNA:   3'- aGCGGUGGUuGUGG---UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 226088 0.73 0.696345
Target:  5'- uUCGCauccuuagagcaauCACUAGaACCACCGACACCACc -3'
miRNA:   3'- -AGCG--------------GUGGUUgUGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 181989 0.73 0.699325
Target:  5'- -gGCaACCAGCACCACCGAUugUAUg -3'
miRNA:   3'- agCGgUGGUUGUGGUGGUUGugGUGa -5'
16667 5' -54.5 NC_004156.1 + 54054 0.72 0.77623
Target:  5'- aUCGauCCAUCGGcCACCACCAGguCCACUu -3'
miRNA:   3'- -AGC--GGUGGUU-GUGGUGGUUguGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 75196 0.71 0.803239
Target:  5'- gUUGCCAUUGuCACCACCGcCACCAUc -3'
miRNA:   3'- -AGCGGUGGUuGUGGUGGUuGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 41090 0.71 0.81195
Target:  5'- cCGCCGCCugauCCACCGAaACCGCc -3'
miRNA:   3'- aGCGGUGGuuguGGUGGUUgUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 49759 0.71 0.828889
Target:  5'- gUCaCUACCAAuguCACUACCAAUAUCACUg -3'
miRNA:   3'- -AGcGGUGGUU---GUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 127041 0.74 0.659267
Target:  5'- gUCGUCGCgAGCAUCACCGGCAaaCACUa -3'
miRNA:   3'- -AGCGGUGgUUGUGGUGGUUGUg-GUGA- -5'
16667 5' -54.5 NC_004156.1 + 183865 0.75 0.639078
Target:  5'- aUCGCUuCCAcagcACACUACCGAuCGCCACa -3'
miRNA:   3'- -AGCGGuGGU----UGUGGUGGUU-GUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 53326 0.75 0.628971
Target:  5'- cCGUCaauGCCAGCAUCaaaACCAGCACCACc -3'
miRNA:   3'- aGCGG---UGGUUGUGG---UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 118640 0.8 0.344953
Target:  5'- aUGCUACUAAUACUACCAAUACUACUa -3'
miRNA:   3'- aGCGGUGGUUGUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 150002 0.8 0.384515
Target:  5'- aCGCCACCAACACUACCAcccaaACUACc -3'
miRNA:   3'- aGCGGUGGUUGUGGUGGUug---UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 4775 0.77 0.490788
Target:  5'- aUCGCCACCAGugguauCACCACCAGucaACCAUc -3'
miRNA:   3'- -AGCGGUGGUU------GUGGUGGUUg--UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 164700 0.77 0.500272
Target:  5'- gUCGCCuCCGGCACCGCgAGcCACCAUc -3'
miRNA:   3'- -AGCGGuGGUUGUGGUGgUU-GUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 107790 0.77 0.519475
Target:  5'- ---aCACCAAUACCaaaACCAACACCGCUa -3'
miRNA:   3'- agcgGUGGUUGUGG---UGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 41018 0.76 0.578618
Target:  5'- cCGCCACCGAaGCCACCAccuccgGCACCu-- -3'
miRNA:   3'- aGCGGUGGUUgUGGUGGU------UGUGGuga -5'
16667 5' -54.5 NC_004156.1 + 106715 0.75 0.598694
Target:  5'- aUCGCCACC-GCAaugCACCAGgcCACCACUc -3'
miRNA:   3'- -AGCGGUGGuUGUg--GUGGUU--GUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 85907 0.75 0.615837
Target:  5'- cUCGCUACCAGUACCcguugcgauucuuuACCAACACCuACUa -3'
miRNA:   3'- -AGCGGUGGUUGUGG--------------UGGUUGUGG-UGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.