miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 54863 0.88 0.13148
Target:  5'- cUGCUACCGAUGCCGCCAAUGCCACUa -3'
miRNA:   3'- aGCGGUGGUUGUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 92024 0.72 0.766964
Target:  5'- aCGCCACCGACuCCGaguCCGAgGCCAa- -3'
miRNA:   3'- aGCGGUGGUUGuGGU---GGUUgUGGUga -5'
16667 5' -54.5 NC_004156.1 + 176073 0.72 0.77623
Target:  5'- cUGCCGCCu---CUGCCAGCACCAUUu -3'
miRNA:   3'- aGCGGUGGuuguGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 40239 0.66 0.980086
Target:  5'- gCGUCACCAAaGCCaaaACCAGaGCCAUg -3'
miRNA:   3'- aGCGGUGGUUgUGG---UGGUUgUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 149493 0.8 0.384515
Target:  5'- cCGCCuccucguauACCGACGCCACCuucuACGCCACc -3'
miRNA:   3'- aGCGG---------UGGUUGUGGUGGu---UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 115102 0.79 0.39278
Target:  5'- cCaCUACCAACACCACUAGCACUACc -3'
miRNA:   3'- aGcGGUGGUUGUGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 136620 0.76 0.538961
Target:  5'- aUCGCaacagcaACCAACGCCACUugGGCACCAUc -3'
miRNA:   3'- -AGCGg------UGGUUGUGGUGG--UUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 443 0.75 0.618867
Target:  5'- aCGCCACUAGCAaacaaCACCAGCAaaCACUa -3'
miRNA:   3'- aGCGGUGGUUGUg----GUGGUUGUg-GUGA- -5'
16667 5' -54.5 NC_004156.1 + 75866 0.73 0.709224
Target:  5'- gCGCCugCGuccaaaaacauuGCACUACaCAACGCCACc -3'
miRNA:   3'- aGCGGugGU------------UGUGGUG-GUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 141980 0.72 0.766964
Target:  5'- aCGCUacucuuuggACUAGCGCUACCGGCGCCuACa -3'
miRNA:   3'- aGCGG---------UGGUUGUGGUGGUUGUGG-UGa -5'
16667 5' -54.5 NC_004156.1 + 63289 0.73 0.72882
Target:  5'- aCGCCACCAAgAUUAa-GACACCACg -3'
miRNA:   3'- aGCGGUGGUUgUGGUggUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 115079 0.74 0.679372
Target:  5'- --nCCuCCAACACCACUAGCACUACc -3'
miRNA:   3'- agcGGuGGUUGUGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 149522 0.84 0.227403
Target:  5'- cUCGUaCACCGACACCACCuucuACACCACc -3'
miRNA:   3'- -AGCG-GUGGUUGUGGUGGu---UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 99410 0.73 0.738501
Target:  5'- gUUGCC-CCAuuuAUACCACCAAUACCGu- -3'
miRNA:   3'- -AGCGGuGGU---UGUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 124598 0.82 0.281344
Target:  5'- gUCGCCGCUAcC-CCACCGACGCCGCc -3'
miRNA:   3'- -AGCGGUGGUuGuGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 193175 0.74 0.669335
Target:  5'- gCGCUGCC---GCCACCAGCuACCGCUg -3'
miRNA:   3'- aGCGGUGGuugUGGUGGUUG-UGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 146963 0.73 0.748091
Target:  5'- aUGCCAUC--CACCGCCAACACUAg- -3'
miRNA:   3'- aGCGGUGGuuGUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 228031 0.72 0.766964
Target:  5'- cCaCCACaCAACGCCA-CAACGCCACa -3'
miRNA:   3'- aGcGGUG-GUUGUGGUgGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 149565 0.81 0.315468
Target:  5'- aCGCCACCuccuacaccGACGCCACCuucuACGCCACc -3'
miRNA:   3'- aGCGGUGG---------UUGUGGUGGu---UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 102561 0.77 0.500272
Target:  5'- cCaCCACCGACACCAguaaCAACACCACc -3'
miRNA:   3'- aGcGGUGGUUGUGGUg---GUUGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.