miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 127041 0.74 0.659267
Target:  5'- gUCGUCGCgAGCAUCACCGGCAaaCACUa -3'
miRNA:   3'- -AGCGGUGgUUGUGGUGGUUGUg-GUGA- -5'
16667 5' -54.5 NC_004156.1 + 215212 0.74 0.659267
Target:  5'- cCGUgCACCAACACCACgAcCACCAUa -3'
miRNA:   3'- aGCG-GUGGUUGUGGUGgUuGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 193175 0.74 0.669335
Target:  5'- gCGCUGCC---GCCACCAGCuACCGCUg -3'
miRNA:   3'- aGCGGUGGuugUGGUGGUUG-UGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 115079 0.74 0.679372
Target:  5'- --nCCuCCAACACCACUAGCACUACc -3'
miRNA:   3'- agcGGuGGUUGUGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 46385 0.74 0.689372
Target:  5'- aUGCUACUAcUACCaacACCAACACCACa -3'
miRNA:   3'- aGCGGUGGUuGUGG---UGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 226088 0.73 0.696345
Target:  5'- uUCGCauccuuagagcaauCACUAGaACCACCGACACCACc -3'
miRNA:   3'- -AGCG--------------GUGGUUgUGGUGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 181989 0.73 0.699325
Target:  5'- -gGCaACCAGCACCACCGAUugUAUg -3'
miRNA:   3'- agCGgUGGUUGUGGUGGUUGugGUGa -5'
16667 5' -54.5 NC_004156.1 + 75866 0.73 0.709224
Target:  5'- gCGCCugCGuccaaaaacauuGCACUACaCAACGCCACc -3'
miRNA:   3'- aGCGGugGU------------UGUGGUG-GUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 63289 0.73 0.72882
Target:  5'- aCGCCACCAAgAUUAa-GACACCACg -3'
miRNA:   3'- aGCGGUGGUUgUGGUggUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 142128 0.73 0.72882
Target:  5'- cUUGCCACUAccauUACUACCAAUACUGCUg -3'
miRNA:   3'- -AGCGGUGGUu---GUGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 99410 0.73 0.738501
Target:  5'- gUUGCC-CCAuuuAUACCACCAAUACCGu- -3'
miRNA:   3'- -AGCGGuGGU---UGUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 146963 0.73 0.748091
Target:  5'- aUGCCAUC--CACCGCCAACACUAg- -3'
miRNA:   3'- aGCGGUGGuuGUGGUGGUUGUGGUga -5'
16667 5' -54.5 NC_004156.1 + 141980 0.72 0.766964
Target:  5'- aCGCUacucuuuggACUAGCGCUACCGGCGCCuACa -3'
miRNA:   3'- aGCGG---------UGGUUGUGGUGGUUGUGG-UGa -5'
16667 5' -54.5 NC_004156.1 + 228031 0.72 0.766964
Target:  5'- cCaCCACaCAACGCCA-CAACGCCACa -3'
miRNA:   3'- aGcGGUG-GUUGUGGUgGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 92024 0.72 0.766964
Target:  5'- aCGCCACCGACuCCGaguCCGAgGCCAa- -3'
miRNA:   3'- aGCGGUGGUUGuGGU---GGUUgUGGUga -5'
16667 5' -54.5 NC_004156.1 + 176073 0.72 0.77623
Target:  5'- cUGCCGCCu---CUGCCAGCACCAUUu -3'
miRNA:   3'- aGCGGUGGuuguGGUGGUUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 54054 0.72 0.77623
Target:  5'- aUCGauCCAUCGGcCACCACCAGguCCACUu -3'
miRNA:   3'- -AGC--GGUGGUU-GUGGUGGUUguGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 75196 0.71 0.803239
Target:  5'- gUUGCCAUUGuCACCACCGcCACCAUc -3'
miRNA:   3'- -AGCGGUGGUuGUGGUGGUuGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 41090 0.71 0.81195
Target:  5'- cCGCCGCCugauCCACCGAaACCGCc -3'
miRNA:   3'- aGCGGUGGuuguGGUGGUUgUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 39549 0.71 0.81195
Target:  5'- gCGCCAgCAACACUagcaguGCCAGCGaCACUa -3'
miRNA:   3'- aGCGGUgGUUGUGG------UGGUUGUgGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.