Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16667 | 5' | -54.5 | NC_004156.1 | + | 104178 | 0.66 | 0.977856 |
Target: 5'- -aGUUugCAucCACCACCAACACUg-- -3' miRNA: 3'- agCGGugGUu-GUGGUGGUUGUGGuga -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 41114 | 0.66 | 0.980086 |
Target: 5'- cCuCCACCGAaaccuCCACUuGCACCACc -3' miRNA: 3'- aGcGGUGGUUgu---GGUGGuUGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 68485 | 0.67 | 0.963889 |
Target: 5'- ----uGCCAGCAgUACCAGCACUGCa -3' miRNA: 3'- agcggUGGUUGUgGUGGUUGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 39442 | 0.67 | 0.963889 |
Target: 5'- aCGa-GgCGACACCACCAaagaagGCACCGCc -3' miRNA: 3'- aGCggUgGUUGUGGUGGU------UGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 39889 | 0.67 | 0.964217 |
Target: 5'- aCGCCuccuaauacgguuaCAACACCuACCAcgaguGCACCACc -3' miRNA: 3'- aGCGGug------------GUUGUGG-UGGU-----UGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 46490 | 0.67 | 0.96519 |
Target: 5'- --aCUACCAACACaccauccagcuccaaCACUGGCACCACa -3' miRNA: 3'- agcGGUGGUUGUG---------------GUGGUUGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 40010 | 0.67 | 0.948978 |
Target: 5'- aUCGCCcagACagaAACGCUACCuGACGCCAg- -3' miRNA: 3'- -AGCGG---UGg--UUGUGGUGG-UUGUGGUga -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 107817 | 0.67 | 0.948978 |
Target: 5'- aCaCUACCAcCACCAUCAACACUAa- -3' miRNA: 3'- aGcGGUGGUuGUGGUGGUUGUGGUga -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 40860 | 0.67 | 0.948978 |
Target: 5'- cCuaUACCuACACCACCuACACUACc -3' miRNA: 3'- aGcgGUGGuUGUGGUGGuUGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 153469 | 0.67 | 0.953037 |
Target: 5'- gUGCUACgAACGCuugucguuugaCACCAACACCGa- -3' miRNA: 3'- aGCGGUGgUUGUG-----------GUGGUUGUGGUga -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 1798 | 0.67 | 0.956872 |
Target: 5'- cCGCUACUAGCAgUgguagcaguugcGCUAGCGCUACUa -3' miRNA: 3'- aGCGGUGGUUGUgG------------UGGUUGUGGUGA- -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 148864 | 0.67 | 0.960488 |
Target: 5'- uUUGCUGCCAACGCUugGCCAAUuugagACuCACUc -3' miRNA: 3'- -AGCGGUGGUUGUGG--UGGUUG-----UG-GUGA- -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 85397 | 0.67 | 0.953037 |
Target: 5'- aUCGCgaaauCGCCAuCGuuGCCGGCACCAUc -3' miRNA: 3'- -AGCG-----GUGGUuGUggUGGUUGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 46902 | 0.67 | 0.953037 |
Target: 5'- gUCGCCguuCAACACCACCuACAauaCAUg -3' miRNA: 3'- -AGCGGug-GUUGUGGUGGuUGUg--GUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 150736 | 0.67 | 0.951843 |
Target: 5'- aCGCCcugACCGAUGugcagcacaaguguCCGCCGAcCACCACg -3' miRNA: 3'- aGCGG---UGGUUGU--------------GGUGGUU-GUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 132670 | 0.67 | 0.963558 |
Target: 5'- aCGaucaCACCAguguacaugcuGCACUauguacaGCCGACGCCACa -3' miRNA: 3'- aGCg---GUGGU-----------UGUGG-------UGGUUGUGGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 3525 | 0.67 | 0.962891 |
Target: 5'- cCGCCACCGGCuuCACUAgagauuuuaugaauACGCgGCa -3' miRNA: 3'- aGCGGUGGUUGugGUGGU--------------UGUGgUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 190594 | 0.67 | 0.953037 |
Target: 5'- cUCGUCAgCGuACAUCAUCGugACUACUa -3' miRNA: 3'- -AGCGGUgGU-UGUGGUGGUugUGGUGA- -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 86401 | 0.67 | 0.956872 |
Target: 5'- -gGCCucACCAGCaagaGCCGCCGagaGCugCACg -3' miRNA: 3'- agCGG--UGGUUG----UGGUGGU---UGugGUGa -5' |
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16667 | 5' | -54.5 | NC_004156.1 | + | 225185 | 0.67 | 0.948978 |
Target: 5'- -aGCCAUCAGacaagACUACUAAUACUACUa -3' miRNA: 3'- agCGGUGGUUg----UGGUGGUUGUGGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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