Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16668 | 3' | -54.5 | NC_004156.1 | + | 57269 | 0.68 | 0.939409 |
Target: 5'- aCGUUUucguuCGGCuGCUUCAGCaUCgGCu -3' miRNA: 3'- -GCAAAuc---GCCGuCGAAGUCGgAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57302 | 0.69 | 0.905364 |
Target: 5'- gCGUUUAGCGGCuGCUUguuccucucuaauaCGuuuuuCCUCUGCa -3' miRNA: 3'- -GCAAAUCGCCGuCGAA--------------GUc----GGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57350 | 0.68 | 0.939409 |
Target: 5'- aCGUUUucguuCGGCuGCUUCAGCaUCgGCu -3' miRNA: 3'- -GCAAAuc---GCCGuCGAAGUCGgAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57383 | 0.76 | 0.576649 |
Target: 5'- gCGUUUGGCu---GCcUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGccguCGaAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57410 | 1.04 | 0.011406 |
Target: 5'- gCGUUUAGCGGCAGCUUCAGCCUCgGCu -3' miRNA: 3'- -GCAAAUCGCCGUCGAAGUCGGAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57440 | 0.71 | 0.810397 |
Target: 5'- aCGUUUAGCGGCuGCU--AGUUcaUCUGCa -3' miRNA: 3'- -GCAAAUCGCCGuCGAagUCGG--AGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57476 | 0.82 | 0.286459 |
Target: 5'- uCGUU---CaGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAaucGcCGUCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57530 | 0.77 | 0.498344 |
Target: 5'- aCGUUUAGCGGCGGCU--AGUUcaUCUGCa -3' miRNA: 3'- -GCAAAUCGCCGUCGAagUCGG--AGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57566 | 0.82 | 0.286459 |
Target: 5'- uCGUU---CaGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAaucGcCGUCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57620 | 0.85 | 0.200247 |
Target: 5'- aCGUUUGGCGGCuGCUUCAGCaUCgGCc -3' miRNA: 3'- -GCAAAUCGCCGuCGAAGUCGgAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57677 | 0.85 | 0.200247 |
Target: 5'- aCGUUUGGCGGCuGCUUCAGCaUCgGCc -3' miRNA: 3'- -GCAAAUCGCCGuCGAAGUCGgAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57707 | 0.69 | 0.894606 |
Target: 5'- uCGUUUu---GCuGCUUCAGCCUCgGCu -3' miRNA: 3'- -GCAAAucgcCGuCGAAGUCGGAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57734 | 1.12 | 0.003511 |
Target: 5'- aCGUUUAGCGGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGCCGUCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57764 | 1.12 | 0.003812 |
Target: 5'- gCGUUUAGCGGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGCCGUCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57794 | 1.11 | 0.004139 |
Target: 5'- gCGUUUGGCGGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGCCGUCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57824 | 0.77 | 0.507898 |
Target: 5'- aCGUUUGGCGGCuGCUUCAaUCUCaGCu -3' miRNA: 3'- -GCAAAUCGCCGuCGAAGUcGGAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57854 | 0.94 | 0.050709 |
Target: 5'- aCGUUUGGCuucGGCuGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCG---CCGuCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57886 | 1.12 | 0.003812 |
Target: 5'- gCGUUUAGCGGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGCCGUCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57917 | 0.84 | 0.231665 |
Target: 5'- aGUUUGGCuGCcGCUUCAGCCUCgGCu -3' miRNA: 3'- gCAAAUCGcCGuCGAAGUCGGAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 57946 | 1.12 | 0.003812 |
Target: 5'- aCGUUUGGCGGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGCCGUCGAAGUCGGAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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