Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16668 | 3' | -54.5 | NC_004156.1 | + | 57977 | 0.84 | 0.231665 |
Target: 5'- aGUUUGGCuGCcGCUUCAGCCUCgGCu -3' miRNA: 3'- gCAAAUCGcCGuCGAAGUCGGAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58006 | 1.02 | 0.016266 |
Target: 5'- aCGUUUGGCaGCAGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGcCGUCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58035 | 0.68 | 0.918864 |
Target: 5'- -----uGCGcuuuGCuGCUUCAGCCUCgGCu -3' miRNA: 3'- gcaaauCGC----CGuCGAAGUCGGAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58063 | 0.73 | 0.697456 |
Target: 5'- aCGUUUAGCGGCguccgcaucGGCUUUgcguuuGGCUUCgGCu -3' miRNA: 3'- -GCAAAUCGCCG---------UCGAAG------UCGGAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58129 | 0.84 | 0.205213 |
Target: 5'- uCGUU---CGGCuGCUUCAGCCUCCGCu -3' miRNA: 3'- -GCAAaucGCCGuCGAAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58156 | 0.85 | 0.200247 |
Target: 5'- gCGUUUGGCuGCcGCcUCAGCCUCCGCu -3' miRNA: 3'- -GCAAAUCGcCGuCGaAGUCGGAGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58186 | 0.72 | 0.755844 |
Target: 5'- aCGUUUGGCuucGGCuGCUucagcaUCAGCCuUUCGCu -3' miRNA: 3'- -GCAAAUCG---CCGuCGA------AGUCGG-AGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58246 | 0.75 | 0.606808 |
Target: 5'- aCGUUUGGCuucGGCuGCUUCAGCaUCgGCu -3' miRNA: 3'- -GCAAAUCG---CCGuCGAAGUCGgAGgCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58279 | 0.72 | 0.755844 |
Target: 5'- aCGUUUGGCuucGGCuGCUucagcaUCAGCCuUUCGCu -3' miRNA: 3'- -GCAAAUCG---CCGuCGA------AGUCGG-AGGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 58339 | 0.69 | 0.907194 |
Target: 5'- aCGUUUGGCGGCGuCcUCAucuGCCUUgCGCu -3' miRNA: 3'- -GCAAAUCGCCGUcGaAGU---CGGAG-GCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 68412 | 0.66 | 0.975048 |
Target: 5'- uGUUUGGCuGGCGGCUccUCGGaCUcgUCCa- -3' miRNA: 3'- gCAAAUCG-CCGUCGA--AGUC-GG--AGGcg -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 178408 | 0.7 | 0.874055 |
Target: 5'- uGUcUGGCGGUGGCUcuUguGCCagaCCGCu -3' miRNA: 3'- gCAaAUCGCCGUCGA--AguCGGa--GGCG- -5' |
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16668 | 3' | -54.5 | NC_004156.1 | + | 210459 | 0.71 | 0.843724 |
Target: 5'- aCGgcuccuGCuGCGGCUgCGGCCUCUGCc -3' miRNA: 3'- -GCaaau--CGcCGUCGAaGUCGGAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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