miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 3' -51.9 NC_004156.1 + 131489 0.67 0.990441
Target:  5'- uGCUACCGGUACUGuuGCU----CCGGa -3'
miRNA:   3'- -UGAUGGUCAUGAUcuCGGucauGGCC- -5'
16669 3' -51.9 NC_004156.1 + 139876 0.69 0.975812
Target:  5'- uCUACCAGUGC-GGAGUCGuauuGU-CCGGu -3'
miRNA:   3'- uGAUGGUCAUGaUCUCGGU----CAuGGCC- -5'
16669 3' -51.9 NC_004156.1 + 158531 0.7 0.957125
Target:  5'- uACUACUAGUGCUA---CCAGUACUGc -3'
miRNA:   3'- -UGAUGGUCAUGAUcucGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 164659 0.76 0.715481
Target:  5'- -gUACUGGUACUGGAGaggguaCCAGUGCUGGc -3'
miRNA:   3'- ugAUGGUCAUGAUCUC------GGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 171446 0.7 0.949153
Target:  5'- uGCUACCAGUGCUcGAuCCGuUGCCGc -3'
miRNA:   3'- -UGAUGGUCAUGAuCUcGGUcAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 173570 0.69 0.970412
Target:  5'- -aUACC-GUAUUaAGAGUguGUACCGGu -3'
miRNA:   3'- ugAUGGuCAUGA-UCUCGguCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 175692 0.73 0.874379
Target:  5'- --aACCcauGGUACUGGAGCCcauGUACCGc -3'
miRNA:   3'- ugaUGG---UCAUGAUCUCGGu--CAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 185944 0.79 0.563047
Target:  5'- -gUACCAGUACcAGuGCCAGUGCCa- -3'
miRNA:   3'- ugAUGGUCAUGaUCuCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 191326 0.68 0.982311
Target:  5'- cACUACCAGUAgUGGuGuaaucaaaauccaCCGGcACCGGu -3'
miRNA:   3'- -UGAUGGUCAUgAUCuC-------------GGUCaUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 206077 0.67 0.991616
Target:  5'- -gUACCGGUGCUgucacuGGAGCCAauaugagcaaUACUGGg -3'
miRNA:   3'- ugAUGGUCAUGA------UCUCGGUc---------AUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 206314 0.69 0.975812
Target:  5'- aGC-ACCGGUACcAGuGCCGGUACUc- -3'
miRNA:   3'- -UGaUGGUCAUGaUCuCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 209420 0.74 0.80993
Target:  5'- -gUACCAGaACcAGAGUCGGUAUCGGu -3'
miRNA:   3'- ugAUGGUCaUGaUCUCGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 211026 0.7 0.960772
Target:  5'- uGC-ACC-GUugUGuGAGCCAGaGCCGGa -3'
miRNA:   3'- -UGaUGGuCAugAU-CUCGGUCaUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 216883 0.66 0.995226
Target:  5'- --gGCCAccgACUauGGuGCCAGUACCGa -3'
miRNA:   3'- ugaUGGUca-UGA--UCuCGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 217285 0.67 0.991616
Target:  5'- aACUACCAGUACUugaaugcacAGAGCUAcaacauuUGCCa- -3'
miRNA:   3'- -UGAUGGUCAUGA---------UCUCGGUc------AUGGcc -5'
16669 3' -51.9 NC_004156.1 + 220264 0.68 0.987703
Target:  5'- aACUGCaagAGUAC-AGAGCCAuaGCCGa -3'
miRNA:   3'- -UGAUGg--UCAUGaUCUCGGUcaUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.