miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 3' -51.9 NC_004156.1 + 17668 0.69 0.975812
Target:  5'- cACUACUAGUGCUAcaaCUAGUACCa- -3'
miRNA:   3'- -UGAUGGUCAUGAUcucGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 22581 0.68 0.978225
Target:  5'- --gACuCGGUGCUcGGAGCuCGGUGCuCGGu -3'
miRNA:   3'- ugaUG-GUCAUGA-UCUCG-GUCAUG-GCC- -5'
16669 3' -51.9 NC_004156.1 + 39674 0.7 0.953253
Target:  5'- uACUACCAcUAgUAGuguuGCUGGUACUGGg -3'
miRNA:   3'- -UGAUGGUcAUgAUCu---CGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 40793 0.68 0.982509
Target:  5'- --gGCCAGaGCcAGAGCCAGaGCCa- -3'
miRNA:   3'- ugaUGGUCaUGaUCUCGGUCaUGGcc -5'
16669 3' -51.9 NC_004156.1 + 45232 0.67 0.990441
Target:  5'- cGCUACCuGUACcgAGAGCCucuGUcuguUCGGc -3'
miRNA:   3'- -UGAUGGuCAUGa-UCUCGGu--CAu---GGCC- -5'
16669 3' -51.9 NC_004156.1 + 52131 0.67 0.993624
Target:  5'- cACUGCUAGga-UAGAuuacauuggugGCCacGGUACCGGu -3'
miRNA:   3'- -UGAUGGUCaugAUCU-----------CGG--UCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 58751 1.11 0.007898
Target:  5'- cACUACCAGUACUAGAGCCAGUACCGGa -3'
miRNA:   3'- -UGAUGGUCAUGAUCUCGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 58784 0.81 0.447241
Target:  5'- aGCUACCAGUACcAGAGCuacCAGUACCa- -3'
miRNA:   3'- -UGAUGGUCAUGaUCUCG---GUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 58814 0.81 0.447241
Target:  5'- aGCUACCAGUACcAGAGCuacCAGUACCa- -3'
miRNA:   3'- -UGAUGGUCAUGaUCUCG---GUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 59008 0.75 0.76417
Target:  5'- gGCU-CCGGUACUGGcuCUAGUACUGGu -3'
miRNA:   3'- -UGAuGGUCAUGAUCucGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 59044 0.71 0.940252
Target:  5'- aGCU-CUGGUACUGGuAGCUcuGGUACUGGu -3'
miRNA:   3'- -UGAuGGUCAUGAUC-UCGG--UCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 59084 0.72 0.91384
Target:  5'- gGCUGCUgguagcacuGGUACUGGuAGCUcuGGUACUGGu -3'
miRNA:   3'- -UGAUGG---------UCAUGAUC-UCGG--UCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 66999 0.7 0.960772
Target:  5'- --cAUCAGUACUGguuGAGCCAcuaUACCGGu -3'
miRNA:   3'- ugaUGGUCAUGAU---CUCGGUc--AUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 80005 0.67 0.989139
Target:  5'- uGCUGCguaaAGUACauaaacAGAGUCAGUGCCa- -3'
miRNA:   3'- -UGAUGg---UCAUGa-----UCUCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 80506 0.68 0.986125
Target:  5'- cACUcaAUCGGcUACUGGuGCgAGUACUGGc -3'
miRNA:   3'- -UGA--UGGUC-AUGAUCuCGgUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 81979 0.67 0.992675
Target:  5'- -gUGCCAGcUGC-AGAGCCA--ACUGGa -3'
miRNA:   3'- ugAUGGUC-AUGaUCUCGGUcaUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 90295 0.76 0.744982
Target:  5'- aGCUGCCgAGUacaccGCUGGGuguGCCAGUGCCGu -3'
miRNA:   3'- -UGAUGG-UCA-----UGAUCU---CGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 109169 0.66 0.994472
Target:  5'- -aUGCCGGUGCcgagagUAGAGCCccAGUcUCGGc -3'
miRNA:   3'- ugAUGGUCAUG------AUCUCGG--UCAuGGCC- -5'
16669 3' -51.9 NC_004156.1 + 113658 0.68 0.987703
Target:  5'- --aGCCAGUAgacgAGAuaccgGCCAGUACCGu -3'
miRNA:   3'- ugaUGGUCAUga--UCU-----CGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 123061 0.69 0.973211
Target:  5'- aACcACCGGUGCaagcaccAGuGCCAGUACCa- -3'
miRNA:   3'- -UGaUGGUCAUGa------UCuCGGUCAUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.