Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16669 | 3' | -51.9 | NC_004156.1 | + | 220264 | 0.68 | 0.987703 |
Target: 5'- aACUGCaagAGUAC-AGAGCCAuaGCCGa -3' miRNA: 3'- -UGAUGg--UCAUGaUCUCGGUcaUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 217285 | 0.67 | 0.991616 |
Target: 5'- aACUACCAGUACUugaaugcacAGAGCUAcaacauuUGCCa- -3' miRNA: 3'- -UGAUGGUCAUGA---------UCUCGGUc------AUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 216883 | 0.66 | 0.995226 |
Target: 5'- --gGCCAccgACUauGGuGCCAGUACCGa -3' miRNA: 3'- ugaUGGUca-UGA--UCuCGGUCAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 211026 | 0.7 | 0.960772 |
Target: 5'- uGC-ACC-GUugUGuGAGCCAGaGCCGGa -3' miRNA: 3'- -UGaUGGuCAugAU-CUCGGUCaUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 209420 | 0.74 | 0.80993 |
Target: 5'- -gUACCAGaACcAGAGUCGGUAUCGGu -3' miRNA: 3'- ugAUGGUCaUGaUCUCGGUCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 206314 | 0.69 | 0.975812 |
Target: 5'- aGC-ACCGGUACcAGuGCCGGUACUc- -3' miRNA: 3'- -UGaUGGUCAUGaUCuCGGUCAUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 206077 | 0.67 | 0.991616 |
Target: 5'- -gUACCGGUGCUgucacuGGAGCCAauaugagcaaUACUGGg -3' miRNA: 3'- ugAUGGUCAUGA------UCUCGGUc---------AUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 191326 | 0.68 | 0.982311 |
Target: 5'- cACUACCAGUAgUGGuGuaaucaaaauccaCCGGcACCGGu -3' miRNA: 3'- -UGAUGGUCAUgAUCuC-------------GGUCaUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 185944 | 0.79 | 0.563047 |
Target: 5'- -gUACCAGUACcAGuGCCAGUGCCa- -3' miRNA: 3'- ugAUGGUCAUGaUCuCGGUCAUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 175692 | 0.73 | 0.874379 |
Target: 5'- --aACCcauGGUACUGGAGCCcauGUACCGc -3' miRNA: 3'- ugaUGG---UCAUGAUCUCGGu--CAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 173570 | 0.69 | 0.970412 |
Target: 5'- -aUACC-GUAUUaAGAGUguGUACCGGu -3' miRNA: 3'- ugAUGGuCAUGA-UCUCGguCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 171446 | 0.7 | 0.949153 |
Target: 5'- uGCUACCAGUGCUcGAuCCGuUGCCGc -3' miRNA: 3'- -UGAUGGUCAUGAuCUcGGUcAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 164659 | 0.76 | 0.715481 |
Target: 5'- -gUACUGGUACUGGAGaggguaCCAGUGCUGGc -3' miRNA: 3'- ugAUGGUCAUGAUCUC------GGUCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 158531 | 0.7 | 0.957125 |
Target: 5'- uACUACUAGUGCUA---CCAGUACUGc -3' miRNA: 3'- -UGAUGGUCAUGAUcucGGUCAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 139876 | 0.69 | 0.975812 |
Target: 5'- uCUACCAGUGC-GGAGUCGuauuGU-CCGGu -3' miRNA: 3'- uGAUGGUCAUGaUCUCGGU----CAuGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 131489 | 0.67 | 0.990441 |
Target: 5'- uGCUACCGGUACUGuuGCU----CCGGa -3' miRNA: 3'- -UGAUGGUCAUGAUcuCGGucauGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 123061 | 0.69 | 0.973211 |
Target: 5'- aACcACCGGUGCaagcaccAGuGCCAGUACCa- -3' miRNA: 3'- -UGaUGGUCAUGa------UCuCGGUCAUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 113658 | 0.68 | 0.987703 |
Target: 5'- --aGCCAGUAgacgAGAuaccgGCCAGUACCGu -3' miRNA: 3'- ugaUGGUCAUga--UCU-----CGGUCAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 109169 | 0.66 | 0.994472 |
Target: 5'- -aUGCCGGUGCcgagagUAGAGCCccAGUcUCGGc -3' miRNA: 3'- ugAUGGUCAUG------AUCUCGG--UCAuGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 90295 | 0.76 | 0.744982 |
Target: 5'- aGCUGCCgAGUacaccGCUGGGuguGCCAGUGCCGu -3' miRNA: 3'- -UGAUGG-UCA-----UGAUCU---CGGUCAUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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