miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 3' -51.9 NC_004156.1 + 58751 1.11 0.007898
Target:  5'- cACUACCAGUACUAGAGCCAGUACCGGa -3'
miRNA:   3'- -UGAUGGUCAUGAUCUCGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 58784 0.81 0.447241
Target:  5'- aGCUACCAGUACcAGAGCuacCAGUACCa- -3'
miRNA:   3'- -UGAUGGUCAUGaUCUCG---GUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 58814 0.81 0.447241
Target:  5'- aGCUACCAGUACcAGAGCuacCAGUACCa- -3'
miRNA:   3'- -UGAUGGUCAUGaUCUCG---GUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 185944 0.79 0.563047
Target:  5'- -gUACCAGUACcAGuGCCAGUGCCa- -3'
miRNA:   3'- ugAUGGUCAUGaUCuCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 164659 0.76 0.715481
Target:  5'- -gUACUGGUACUGGAGaggguaCCAGUGCUGGc -3'
miRNA:   3'- ugAUGGUCAUGAUCUC------GGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 90295 0.76 0.744982
Target:  5'- aGCUGCCgAGUacaccGCUGGGuguGCCAGUGCCGu -3'
miRNA:   3'- -UGAUGG-UCA-----UGAUCU---CGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 59008 0.75 0.76417
Target:  5'- gGCU-CCGGUACUGGcuCUAGUACUGGu -3'
miRNA:   3'- -UGAuGGUCAUGAUCucGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 209420 0.74 0.80993
Target:  5'- -gUACCAGaACcAGAGUCGGUAUCGGu -3'
miRNA:   3'- ugAUGGUCaUGaUCUCGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 175692 0.73 0.874379
Target:  5'- --aACCcauGGUACUGGAGCCcauGUACCGc -3'
miRNA:   3'- ugaUGG---UCAUGAUCUCGGu--CAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 59084 0.72 0.91384
Target:  5'- gGCUGCUgguagcacuGGUACUGGuAGCUcuGGUACUGGu -3'
miRNA:   3'- -UGAUGG---------UCAUGAUC-UCGG--UCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 59044 0.71 0.940252
Target:  5'- aGCU-CUGGUACUGGuAGCUcuGGUACUGGu -3'
miRNA:   3'- -UGAuGGUCAUGAUC-UCGG--UCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 171446 0.7 0.949153
Target:  5'- uGCUACCAGUGCUcGAuCCGuUGCCGc -3'
miRNA:   3'- -UGAUGGUCAUGAuCUcGGUcAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 39674 0.7 0.953253
Target:  5'- uACUACCAcUAgUAGuguuGCUGGUACUGGg -3'
miRNA:   3'- -UGAUGGUcAUgAUCu---CGGUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 158531 0.7 0.957125
Target:  5'- uACUACUAGUGCUA---CCAGUACUGc -3'
miRNA:   3'- -UGAUGGUCAUGAUcucGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 66999 0.7 0.960772
Target:  5'- --cAUCAGUACUGguuGAGCCAcuaUACCGGu -3'
miRNA:   3'- ugaUGGUCAUGAU---CUCGGUc--AUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 211026 0.7 0.960772
Target:  5'- uGC-ACC-GUugUGuGAGCCAGaGCCGGa -3'
miRNA:   3'- -UGaUGGuCAugAU-CUCGGUCaUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 173570 0.69 0.970412
Target:  5'- -aUACC-GUAUUaAGAGUguGUACCGGu -3'
miRNA:   3'- ugAUGGuCAUGA-UCUCGguCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 123061 0.69 0.973211
Target:  5'- aACcACCGGUGCaagcaccAGuGCCAGUACCa- -3'
miRNA:   3'- -UGaUGGUCAUGa------UCuCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 139876 0.69 0.975812
Target:  5'- uCUACCAGUGC-GGAGUCGuauuGU-CCGGu -3'
miRNA:   3'- uGAUGGUCAUGaUCUCGGU----CAuGGCC- -5'
16669 3' -51.9 NC_004156.1 + 17668 0.69 0.975812
Target:  5'- cACUACUAGUGCUAcaaCUAGUACCa- -3'
miRNA:   3'- -UGAUGGUCAUGAUcucGGUCAUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.