Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16669 | 3' | -51.9 | NC_004156.1 | + | 58751 | 1.11 | 0.007898 |
Target: 5'- cACUACCAGUACUAGAGCCAGUACCGGa -3' miRNA: 3'- -UGAUGGUCAUGAUCUCGGUCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 109169 | 0.66 | 0.994472 |
Target: 5'- -aUGCCGGUGCcgagagUAGAGCCccAGUcUCGGc -3' miRNA: 3'- ugAUGGUCAUG------AUCUCGG--UCAuGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 52131 | 0.67 | 0.993624 |
Target: 5'- cACUGCUAGga-UAGAuuacauuggugGCCacGGUACCGGu -3' miRNA: 3'- -UGAUGGUCaugAUCU-----------CGG--UCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 206077 | 0.67 | 0.991616 |
Target: 5'- -gUACCGGUGCUgucacuGGAGCCAauaugagcaaUACUGGg -3' miRNA: 3'- ugAUGGUCAUGA------UCUCGGUc---------AUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 217285 | 0.67 | 0.991616 |
Target: 5'- aACUACCAGUACUugaaugcacAGAGCUAcaacauuUGCCa- -3' miRNA: 3'- -UGAUGGUCAUGA---------UCUCGGUc------AUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 113658 | 0.68 | 0.987703 |
Target: 5'- --aGCCAGUAgacgAGAuaccgGCCAGUACCGu -3' miRNA: 3'- ugaUGGUCAUga--UCU-----CGGUCAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 80506 | 0.68 | 0.986125 |
Target: 5'- cACUcaAUCGGcUACUGGuGCgAGUACUGGc -3' miRNA: 3'- -UGA--UGGUC-AUGAUCuCGgUCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 22581 | 0.68 | 0.978225 |
Target: 5'- --gACuCGGUGCUcGGAGCuCGGUGCuCGGu -3' miRNA: 3'- ugaUG-GUCAUGA-UCUCG-GUCAUG-GCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 139876 | 0.69 | 0.975812 |
Target: 5'- uCUACCAGUGC-GGAGUCGuauuGU-CCGGu -3' miRNA: 3'- uGAUGGUCAUGaUCUCGGU----CAuGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 58784 | 0.81 | 0.447241 |
Target: 5'- aGCUACCAGUACcAGAGCuacCAGUACCa- -3' miRNA: 3'- -UGAUGGUCAUGaUCUCG---GUCAUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 58814 | 0.81 | 0.447241 |
Target: 5'- aGCUACCAGUACcAGAGCuacCAGUACCa- -3' miRNA: 3'- -UGAUGGUCAUGaUCUCG---GUCAUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 185944 | 0.79 | 0.563047 |
Target: 5'- -gUACCAGUACcAGuGCCAGUGCCa- -3' miRNA: 3'- ugAUGGUCAUGaUCuCGGUCAUGGcc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 175692 | 0.73 | 0.874379 |
Target: 5'- --aACCcauGGUACUGGAGCCcauGUACCGc -3' miRNA: 3'- ugaUGG---UCAUGAUCUCGGu--CAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 39674 | 0.7 | 0.953253 |
Target: 5'- uACUACCAcUAgUAGuguuGCUGGUACUGGg -3' miRNA: 3'- -UGAUGGUcAUgAUCu---CGGUCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 211026 | 0.7 | 0.960772 |
Target: 5'- uGC-ACC-GUugUGuGAGCCAGaGCCGGa -3' miRNA: 3'- -UGaUGGuCAugAU-CUCGGUCaUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 216883 | 0.66 | 0.995226 |
Target: 5'- --gGCCAccgACUauGGuGCCAGUACCGa -3' miRNA: 3'- ugaUGGUca-UGA--UCuCGGUCAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 90295 | 0.76 | 0.744982 |
Target: 5'- aGCUGCCgAGUacaccGCUGGGuguGCCAGUGCCGu -3' miRNA: 3'- -UGAUGG-UCA-----UGAUCU---CGGUCAUGGCc -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 59008 | 0.75 | 0.76417 |
Target: 5'- gGCU-CCGGUACUGGcuCUAGUACUGGu -3' miRNA: 3'- -UGAuGGUCAUGAUCucGGUCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 209420 | 0.74 | 0.80993 |
Target: 5'- -gUACCAGaACcAGAGUCGGUAUCGGu -3' miRNA: 3'- ugAUGGUCaUGaUCUCGGUCAUGGCC- -5' |
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16669 | 3' | -51.9 | NC_004156.1 | + | 59084 | 0.72 | 0.91384 |
Target: 5'- gGCUGCUgguagcacuGGUACUGGuAGCUcuGGUACUGGu -3' miRNA: 3'- -UGAUGG---------UCAUGAUC-UCGG--UCAUGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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